View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8642_high_5 (Length: 287)
Name: NF8642_high_5
Description: NF8642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8642_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 48485815 - 48486078
Alignment:
| Q |
1 |
gagaagtagtatctcacccaatcaccagcatctgaatggtgccaaatctttttgcaaatgccacagtattgtttcgatttaagtaactgtaagaacagaa |
100 |
Q |
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| T |
48485815 |
gagaagtagtatctcacccaatcaccagcatctgaatggtgccaaatctttttgcaaatgccacagtattgtttcgatttaagtaactgtaagaacagaa |
48485914 |
T |
|
| Q |
101 |
ccataaatgttgcaaattaaatttcagcaatagataaattaaggcaaggaaataaagacatcttaaatgagtgattctctgaacctttgcacaagattta |
200 |
Q |
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| T |
48485915 |
ccataaatgttgcaaattaaatttcagcaatagataaattaaggcaaggaaataaaaacatcttaaatgagtgattctctgaacctttgcacaagattta |
48486014 |
T |
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| Q |
201 |
caataatgctgaggagcacagcttgaatccttaatcttcttcatggttttgcatggcaacgtca |
264 |
Q |
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| T |
48486015 |
caataatgctgaggagcacagcttgaatccttaatcttcttcatggttttgcatggcaacgtca |
48486078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 12 - 92
Target Start/End: Complemental strand, 10034987 - 10034907
Alignment:
| Q |
12 |
tctcacccaatcaccagcatctgaatggtgccaaatctttttgcaaatgccacagtattgtttcgatttaagtaactgtaa |
92 |
Q |
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| T |
10034987 |
tctcacccaattcccaccatctgaatggtgccaaatctttttgcaaattccacaatattgttttgattttcgtaactgtaa |
10034907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 260
Target Start/End: Complemental strand, 10034777 - 10034739
Alignment:
| Q |
222 |
cttgaatccttaatcttcttcatggttttgcatggcaac |
260 |
Q |
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| T |
10034777 |
cttgaatccttaaccttcttcatggttttgcatggcaac |
10034739 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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