View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8642_low_1 (Length: 495)
Name: NF8642_low_1
Description: NF8642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8642_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 137 - 406
Target Start/End: Complemental strand, 4357013 - 4356746
Alignment:
| Q |
137 |
aatatatttatgaagcatatattttggagtgttatggtaacaaaagctaatacattattcaacaaaaatatatttatacatagtcataagcatatgaaat |
236 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
4357013 |
aatatatttatgaagcatatattttggagtgttatggtaacaaaggctaatacattattcaacaaaaatatatttatacatagtcataagcat--gaaat |
4356916 |
T |
|
| Q |
237 |
agaggaaataaagaaagaaatataagaaataacagacaaagtagtagaaacgtgaatctcaatttcgccaacaaaaatagtcacatatctcgactcaagt |
336 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||| |
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| T |
4356915 |
agaggaaataaagaaagaaatataagaaataacagacaaagtagtagaaacgtgaatctcaatttcgctaacaaaaatagtcacgtatctcaactcaagt |
4356816 |
T |
|
| Q |
337 |
tcatgatacttcaaaggttgagatcaatatatgatgaatattatagaaaaacactatagttgacataaaa |
406 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4356815 |
tcctgatacttcaaaggttgagatcaatatatgatgaatattatagaaaaacactatagttgacataaaa |
4356746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 4358216 - 4358081
Alignment:
| Q |
1 |
aattatatataggacctttgattttatgcatatagaaaagtagatgttttacgtcactcagacatacgatattcaaagaaaaaacagtaccctgcatttt |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4358216 |
aattatatataggacctttgattttatgcatatagaaaagtagatgttttacgtcactcagacatacgatattcaaagaaaaaacagtaccctgcatttt |
4358117 |
T |
|
| Q |
101 |
atcttataaagttgtatcgcattaaatcatgtgtga |
136 |
Q |
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|
||||||||||||||||||| |||||||||||||||| |
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|
| T |
4358116 |
atcttataaagttgtatcgtattaaatcatgtgtga |
4358081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 405 - 477
Target Start/End: Complemental strand, 4356712 - 4356640
Alignment:
| Q |
405 |
aagttttgcagaacagtcacaggaagcgatgaatcatgattatcctaaaattgttgcattctcacggcatagt |
477 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4356712 |
aagttttgcagaacagtcacaggaagcgatgaatcatgattatcctaaaattgttgcattctcacggcatagt |
4356640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 122; Significance: 2e-62; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 235 - 411
Target Start/End: Original strand, 3598110 - 3598284
Alignment:
| Q |
235 |
atagaggaaataaagaaagaaatataagaaataacagacaaagtagtagaaacgtgaatctcaatttcgccaacaaaaatagtcacatatctcgactcaa |
334 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||| ||||||| |||| |
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|
| T |
3598110 |
atagaggaaataaagaaagaaatataagaaataacagacaaagtagtagaaacgtgaatctcaatttcactactaaaaatagtcac--atctcgaatcaa |
3598207 |
T |
|
| Q |
335 |
gttcatgatacttcaaaggttgagatcaatatatgatgaatattatagaaaaacactatagttgacataaaagtttt |
411 |
Q |
| |
|
||| ||||||||||| ||||||| ||||| ||||||||||| ||||| ||||||||||||||||||||||||||||| |
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|
| T |
3598208 |
gttaatgatacttcagaggttgaaatcaacatatgatgaattttatataaaaacactatagttgacataaaagtttt |
3598284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 405 - 477
Target Start/End: Original strand, 3598313 - 3598384
Alignment:
| Q |
405 |
aagttttgcagaacagtcacaggaagcgatgaatcatgattatcctaaaattgttgcattctcacggcatagt |
477 |
Q |
| |
|
||||||| || |||| |||||||||| ||| |||||||||||||| |||| | || |||| |||||||||||| |
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|
| T |
3598313 |
aagttttacaaaacaatcacaggaagtgat-aatcatgattatccaaaaacttttacattttcacggcatagt |
3598384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 230 - 286
Target Start/End: Original strand, 27962702 - 27962758
Alignment:
| Q |
230 |
atgaaatagaggaaataaagaaagaaatataagaaataacagacaaagtagtagaaa |
286 |
Q |
| |
|
|||||||||||||||| ||| |||||||| | |||| ||| ||||||||||||||| |
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|
| T |
27962702 |
atgaaatagaggaaatgaagcaagaaatagatgaaaaaactaacaaagtagtagaaa |
27962758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 110; Significance: 3e-55; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 34706090 - 34705961
Alignment:
| Q |
1 |
aattatatataggacctttgattttatgcatatagaaaagtagatgttttacgtcactcagacatacgatattcaaagaaaaaacagtaccctgcatttt |
100 |
Q |
| |
|
||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34706090 |
aattataaataggacctttgattctatgcatatagaaaagtagatgttttacgtcactcaaacatacgatattcaaagaaaaaacagtaccctgcatttt |
34705991 |
T |
|
| Q |
101 |
atcttataaagttgtatcgcattaaatcat |
130 |
Q |
| |
|
||| |||||||||||||| ||||||||||| |
|
|
| T |
34705990 |
atcatataaagttgtatcacattaaatcat |
34705961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 149 - 286
Target Start/End: Complemental strand, 24455766 - 24455633
Alignment:
| Q |
149 |
aagcatatattttggagtgttatggtaacaaaagctaatacattattcaacaaaaatatatttatacatagtcataagcatatgaaatagaggaaataaa |
248 |
Q |
| |
|
||||||||||||||||| |||| |||| || |||||| ||| |||||||||||||| | |||| | ||| |||||| |||||||||||||| || |
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|
| T |
24455766 |
aagcatatattttggagc--tatgctaactaaggctaatgcataattcaacaaaaataggatgatactcaatcagaagcat--gaaatagaggaaatgaa |
24455671 |
T |
|
| Q |
249 |
gaaagaaatataagaaataacagacaaagtagtagaaa |
286 |
Q |
| |
|
| |||||||| | |||||||| || |||||||||||| |
|
|
| T |
24455670 |
gcaagaaatagatgaaataactaacgaagtagtagaaa |
24455633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 230 - 286
Target Start/End: Complemental strand, 14838988 - 14838932
Alignment:
| Q |
230 |
atgaaatagaggaaataaagaaagaaatataagaaataacagacaaagtagtagaaa |
286 |
Q |
| |
|
|||||||||||||||| ||| |||||||| | |||| ||| ||||||||||||||| |
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|
| T |
14838988 |
atgaaatagaggaaatgaagcaagaaatagatgaaaaaactaacaaagtagtagaaa |
14838932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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