View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8642_low_3 (Length: 335)

Name: NF8642_low_3
Description: NF8642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8642_low_3
NF8642_low_3
[»] chr6 (4 HSPs)
chr6 (4-321)||(24992527-24992842)
chr6 (3-55)||(23260663-23260715)
chr6 (3-55)||(25005257-25005309)
chr6 (3-55)||(34636300-34636352)
[»] chr5 (2 HSPs)
chr5 (4-55)||(6308759-6308810)
chr5 (3-55)||(536927-536979)
[»] chr4 (2 HSPs)
chr4 (4-55)||(69387-69438)
chr4 (22-123)||(41868764-41868866)
[»] chr8 (1 HSPs)
chr8 (1-55)||(35839212-35839266)
[»] chr7 (3 HSPs)
chr7 (1-55)||(11036406-11036460)
chr7 (3-55)||(15874022-15874074)
chr7 (3-55)||(21491581-21491633)
[»] chr2 (1 HSPs)
chr2 (1-55)||(1193709-1193763)
[»] scaffold1838 (1 HSPs)
scaffold1838 (3-55)||(287-339)
[»] scaffold0013 (1 HSPs)
scaffold0013 (19-55)||(243119-243155)
[»] chr3 (2 HSPs)
chr3 (3-55)||(16975367-16975419)
chr3 (3-55)||(46404647-46404699)


Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 4 - 321
Target Start/End: Original strand, 24992527 - 24992842
Alignment:
Q  4 tggtaaaatttattcttttataaaagtgattattttaattaagttttatatggtatgtgtttatgaggatttgatgtgaaataatatatctcattttatt 103  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  24992527 tggtaaaatttattcttttataaaactgattattttaattaagttttatatggtatgtgtttatgaggatttgatctgaaataatatatctcattttatt 24992626  T
Q  104 tcattatgctttatatgtttgtgatgtt--------aaatgttagatttttgataaattagagaaagaaaataatgttacagtactcaaaattattctta 195  Q
    ||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  24992627 tcattatgctttatatgtttgtgatgttagataaagaaatgttagatttttgataaattagagaaagaaaataatgttacagtagtcaaaattattctta 24992726  T
Q  196 aataaattattaagaaaaggatatgaatatgtatggcctctgggatatagttgctaacagttgctaaagtggttcgatttgacgannnnnnnacgcaatt 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||| |||||||||||||||||       || |||||    
T  24992727 aataaattattaagaaaaggatatgaatatgtatggcctctgggatat----------agttgctaatgtggttcgatttgacgatttttttactcaatt 24992816  T
Q  296 ttattgtgttcgttgattgtgatgtc 321  Q
    ||||||||||||||||||||| ||||    
T  24992817 ttattgtgttcgttgattgtggtgtc 24992842  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 23260715 - 23260663
Alignment:
Q  3 atggtaaaatttattcttttataaaagtgattattttaattaagttttatatg 55  Q
    |||||||||||||  ||||||||||||| |||| ||||||||  |||||||||    
T  23260715 atggtaaaatttagccttttataaaagttattagtttaattatattttatatg 23260663  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 25005257 - 25005309
Alignment:
Q  3 atggtaaaatttattcttttataaaagtgattattttaattaagttttatatg 55  Q
    |||||||||||||  ||||||||||||| |||| ||||||||  |||||||||    
T  25005257 atggtaaaatttaaccttttataaaagttattagtttaattatattttatatg 25005309  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 34636300 - 34636352
Alignment:
Q  3 atggtaaaatttattcttttataaaagtgattattttaattaagttttatatg 55  Q
    |||||||||||||  ||||||||||||| |||| ||||||||  |||||||||    
T  34636300 atggtaaaatttaaccttttataaaagttattagtttaattatattttatatg 34636352  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 6308759 - 6308810
Alignment:
Q  4 tggtaaaatttattcttttataaaagtgattattttaattaagttttatatg 55  Q
    ||||||||| || | ||||||||||||||||||||||||| |||||||||||    
T  6308759 tggtaaaatctaatattttataaaagtgattattttaattgagttttatatg 6308810  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 536927 - 536979
Alignment:
Q  3 atggtaaaatttattcttttataaaagtgattattttaattaagttttatatg 55  Q
    |||||||||||||  ||||||||||||| |||| ||||||||  |||||||||    
T  536927 atggtaaaatttaaccttttataaaagttattagtttaattatattttatatg 536979  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 69387 - 69438
Alignment:
Q  4 tggtaaaatttattcttttataaaagtgattattttaattaagttttatatg 55  Q
    ||||||||| || | ||||||||||||||||||||||||| |||||||||||    
T  69387 tggtaaaatctaatattttataaaagtgattattttaattgagttttatatg 69438  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 123
Target Start/End: Original strand, 41868764 - 41868866
Alignment:
Q  22 tataaaagtgattat-tttaattaagttttatatggtatgtgtttatgaggatttgatgtgaaataatatatctcattttatttcattatgctttatatg 120  Q
    ||||||||||||||| |||| ||| |||||||||| |   ||| |||||| || ||||||| ||| |||||| | ||||||||||||| || ||||||||    
T  41868764 tataaaagtgattatctttatttatgttttatatgatggttgtatatgagaatgtgatgtggaatgatatattttattttatttcattctgatttatatg 41868863  T
Q  121 ttt 123  Q
    |||    
T  41868864 ttt 41868866  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 35839212 - 35839266
Alignment:
Q  1 acatggtaaaatttattcttttataaaagtgattattttaattaagttttatatg 55  Q
    |||||||||||| || | |||||||| |||||||||||||||| |||||||||||    
T  35839212 acatggtaaaatctaatattttataagagtgattattttaattgagttttatatg 35839266  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 11036460 - 11036406
Alignment:
Q  1 acatggtaaaatttattcttttataaaagtgattattttaattaagttttatatg 55  Q
    |||||||||||| || | |||||||| | |||||||||||||| |||||||||||    
T  11036460 acatggtaaaatctaatattttataagaatgattattttaattgagttttatatg 11036406  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 15874074 - 15874022
Alignment:
Q  3 atggtaaaatttattcttttataaaagtgattattttaattaagttttatatg 55  Q
    |||||||||||||  ||||||||||||| |||| ||||||||  |||||||||    
T  15874074 atggtaaaatttaaccttttataaaagttattagtttaattatattttatatg 15874022  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 21491633 - 21491581
Alignment:
Q  3 atggtaaaatttattcttttataaaagtgattattttaattaagttttatatg 55  Q
    |||||||||||||  ||||||||||||| |||| ||||||||  |||||||||    
T  21491633 atggtaaaatttaaccttttataaaagttattagtttaattatattttatatg 21491581  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 1193709 - 1193763
Alignment:
Q  1 acatggtaaaatttattcttttataaaagtgattattttaattaagttttatatg 55  Q
    |||||||||| | || | |||||||| |||||||||||||||| |||||||||||    
T  1193709 acatggtaaagtctaatattttataagagtgattattttaattgagttttatatg 1193763  T

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Target: scaffold1838 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold1838
Description:

Target: scaffold1838; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 287 - 339
Alignment:
Q  3 atggtaaaatttattcttttataaaagtgattattttaattaagttttatatg 55  Q
    |||||||||||||  ||||||||||||| |||| ||||||||  |||||||||    
T  287 atggtaaaatttaaccttttataaaagttattagtttaattatattttatatg 339  T

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Target: scaffold0013 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 243155 - 243119
Alignment:
Q  19 ttttataaaagtgattattttaattaagttttatatg 55  Q
    |||||||| |||||||||||||||| |||||||||||    
T  243155 ttttataagagtgattattttaattgagttttatatg 243119  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 16975367 - 16975419
Alignment:
Q  3 atggtaaaatttattcttttataaaagtgattattttaattaagttttatatg 55  Q
    |||||||||||||  ||||||||||||| |||| ||||||||  |||||||||    
T  16975367 atggtaaaatttaaccttttataaaagttattagtttaattatattttatatg 16975419  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 46404699 - 46404647
Alignment:
Q  3 atggtaaaatttattcttttataaaagtgattattttaattaagttttatatg 55  Q
    |||||||||||||  ||||||||||||| |||| ||||||||  |||||||||    
T  46404699 atggtaaaatttaaccttttataaaagttattagtttaattatattttatatg 46404647  T

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