View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8642_low_8 (Length: 226)
Name: NF8642_low_8
Description: NF8642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8642_low_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 54952865 - 54953079
Alignment:
| Q |
1 |
aaacaatctcaagatacaacaagaacggtttctcaaaattcttttaaacctataaataatggttgaggatacatacatgtgttgatccttcttcaaaaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54952865 |
aaacaatctcaagatacaacaagaacggtttctcaaaattcttttaaacctataaataatggttgaggatacatacatgtgttgatccttcttcaaaaca |
54952964 |
T |
|
| Q |
101 |
gcataattttctactcatcattagttactttgccaagtatgaataattctatagatggttaatttcaaggatttatatatacataggccattatgtacat |
200 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54952965 |
gcatgattttcta--catcattagttactttgccaagtatgaataattctatagatggttaatttcaaggatttatatatacataggccattatgtacat |
54953062 |
T |
|
| Q |
201 |
gggaatgccagtattat |
217 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
54953063 |
gggaatgccagtattat |
54953079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University