View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8643_high_10 (Length: 281)
Name: NF8643_high_10
Description: NF8643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8643_high_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 16 - 275
Target Start/End: Original strand, 43986222 - 43986481
Alignment:
| Q |
16 |
atcatctccgtgctgcgtcgagcttcgagtttattcaaattatcatcaaaatcttcgaatatcactgccctacagtagcttaaaaacccaatcaaagaac |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43986222 |
atcatctccgtgctgcgtcgagcttcgagtttattcaaattttcatcaaaatcttcgaatatcactgccctacagtagcttaaaaacccaatcaaagaac |
43986321 |
T |
|
| Q |
116 |
tcaacaacggaacctctcgttcgtcgcagttcctatcctccaagaaacttatctcgttttctaagaatttgatttctctgtcacaatcattccaggtctt |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
43986322 |
tcaacaacggaacctctcgttcgtcgcagttccgatcctccaagaaacttatctcgttttctaagaatttgatttctctgtcacaatcattccagctctt |
43986421 |
T |
|
| Q |
216 |
gattttaaggtaatgaaggatttcatgcatggtgttcaagtttggttcagttcatctctc |
275 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
43986422 |
gattttaaggtaatgaaggatttcatgcatggtgttcaagtttggttcagttcctctctc |
43986481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University