View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8643_high_14 (Length: 248)
Name: NF8643_high_14
Description: NF8643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8643_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 55263461 - 55263235
Alignment:
| Q |
1 |
agaattgtatttgatgagttatgtatgatttaattatgcattatttaaaccaaatgtggtttattaaccgatgctat----gttcttatggatcatattt |
96 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
55263461 |
agaattgtatttgatgagttatg----atttaattatgcattatttaaaccaaatgtggtttattaaccgatgctatatatgttcttatggatcatattt |
55263366 |
T |
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| Q |
97 |
acataggctttgggcttgaaggtagtgaggaaggttgataatcctgagaacaaggtgatgtttcctcatgcctttttctttgcaatgtgactgacattct |
196 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55263365 |
acataggctttgggcttgaaggtggtgaggaaggttgataatcctgagaacaaggtgatgtttcctcatgcctttttctttgcaatgtgactgacattct |
55263266 |
T |
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| Q |
197 |
aatcagaaagcatagattatacaactacaat |
227 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
55263265 |
aatcagaaagcatagattatacaactacaat |
55263235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 55270325 - 55270099
Alignment:
| Q |
1 |
agaattgtatttgatgagttatgtatgatttaattatgcattatttaaaccaaatgtggtttattaaccgatgctat----gttcttatggatcatattt |
96 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
55270325 |
agaattgtatttgatgagttatg----atttaattatgcattatttaaaccaaatgtggtttattaaccgatgctatatatgttcttatggatcatattt |
55270230 |
T |
|
| Q |
97 |
acataggctttgggcttgaaggtagtgaggaaggttgataatcctgagaacaaggtgatgtttcctcatgcctttttctttgcaatgtgactgacattct |
196 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55270229 |
acataggctttgggcttgaaggtggtgaggaaggttgataatcctgagaacaaggtgatgtttcctcatgcctttttctttgcaatgtgactgacattct |
55270130 |
T |
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| Q |
197 |
aatcagaaagcatagattatacaactacaat |
227 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
55270129 |
aatcagaaagcatagattatacaactacaat |
55270099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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