View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8643_high_19 (Length: 224)
Name: NF8643_high_19
Description: NF8643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8643_high_19 |
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| [»] scaffold0077 (2 HSPs) |
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| [»] scaffold0003 (1 HSPs) |
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| [»] scaffold0295 (1 HSPs) |
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Alignment Details
Target: scaffold0077 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: scaffold0077
Description:
Target: scaffold0077; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 11 - 207
Target Start/End: Complemental strand, 60380 - 60184
Alignment:
| Q |
11 |
gagagaagaagaaatatgtttgtggatatcacgtggaggaccatttcaaacaattttggctactacaagaagatacaggttccactaactttcattaaat |
110 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
60380 |
gagagaagaagaaatacgtttgtggatatcacgtggaggaccatttcaaacaattttggctactacaagaaaatacaggttccactaactttcattaaat |
60281 |
T |
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| Q |
111 |
tactttgcattattctttggataacatacaagttggtgaattttgtgtacctttgtgtgtcataaactttataaatgatcatgttaagttggtatat |
207 |
Q |
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| T |
60280 |
tactttgcattattctttggataacatacaagttggtgaattttgtgtacctttgtgtgtcataaactttataaatgatcatgttaagttggtatat |
60184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0077; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 11 - 207
Target Start/End: Complemental strand, 50632 - 50431
Alignment:
| Q |
11 |
gagagaagaagaaatatgtttgtggatatcacgtggaggaccatttcaaacaattttggctactacaagaagatacaggttccactaactttcattaaat |
110 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
50632 |
gagagaagaagaaatacgtttgtggatatcacgtggaggaccatttcaaacaattttggctactacaagaaaatacaggttccactaactttcattaaat |
50533 |
T |
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| Q |
111 |
tactttgcattattc-----tttggataacatacaagttggtgaattttgtgtacctttgtgtgtcataaactttataaatgatcatgttaagttggtat |
205 |
Q |
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| T |
50532 |
tattttgcattattctttaatttggataacatacaagttggtgaattttgtgtacctttgtgtgtcataaactttataaatgatcatgttaagttggtat |
50433 |
T |
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| Q |
206 |
at |
207 |
Q |
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|| |
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| T |
50432 |
at |
50431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 11 - 207
Target Start/End: Original strand, 41929822 - 41930014
Alignment:
| Q |
11 |
gagagaagaagaaatatgtttgtggatatcacgtggaggaccatttcaaacaattttggctactacaagaagatacaggttccactaactttcattaaat |
110 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||| |
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| T |
41929822 |
gagagaagaagaaatacgtttgtggatatcacgtggaggaccagttcaaacaattttggctactacaagaagatacaggttctacatactttcattaaat |
41929921 |
T |
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| Q |
111 |
tactttgcattattctttggataacatacaagttggtgaattttgtgtacctttgtgtgtcataaactttataaatgatcatgttaagttggtatat |
207 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||| |
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| T |
41929922 |
tactttgcattattctttggataacatacaagtt----aattttgtttacctttctgtgtcataaactttataaatgatcatgttaagtttgtatat |
41930014 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 11 - 147
Target Start/End: Complemental strand, 209852 - 209715
Alignment:
| Q |
11 |
gagagaagaagaaatatgtttgtggatatcacgtggaggaccatttcaaacaatttt-ggctactacaagaagatacaggttccactaactttcattaaa |
109 |
Q |
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||||||||||||| || |||||| ||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
209852 |
gagagaagaagaattacgtttgtcgatatcatgtggaagaccatttcaaacaatttttggctactacaagaagatacaggttccactaactttcattaaa |
209753 |
T |
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| Q |
110 |
ttactttgcattattctttggataacatacaagttggt |
147 |
Q |
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| T |
209752 |
ttactttgcattattctttggataacatacaagttggt |
209715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0295 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: scaffold0295
Description:
Target: scaffold0295; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 139 - 207
Target Start/End: Original strand, 17776 - 17844
Alignment:
| Q |
139 |
caagttggtgaattttgtgtacctttgtgtgtcataaactttataaatgatcatgttaagttggtatat |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17776 |
caagttggtgaattttgtgtacctttgtgtgtcataaactttataaatgatcatgttaagttggtatat |
17844 |
T |
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