View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8643_high_9 (Length: 283)
Name: NF8643_high_9
Description: NF8643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8643_high_9 |
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Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 7 - 267
Target Start/End: Original strand, 34069547 - 34069807
Alignment:
| Q |
7 |
gatggacatcaagtggtaaaaatatcacccaaagtaaacttatcatgtaaatattgtttcaatctactatgataatattcaactttgtttgttgttatgt |
106 |
Q |
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| T |
34069547 |
gatggataccaagtggtaaaactatcacccaaagtaaacttatcatgtaaatattgtttcaatctactatgataatattcaactttgtttgttgttatgt |
34069646 |
T |
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| Q |
107 |
taccaaaatgtataatacgtgttattctggccttcatgattttctccttcaaaggattcaatatgatactttcaacataattcaagaattttggaagatt |
206 |
Q |
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| T |
34069647 |
taccaaaatctataatacgtgttatcctggccatcataattttctccttcaaaggattcaatacaatactttcaacataattcaagaattttggaagatt |
34069746 |
T |
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| Q |
207 |
ttcacacacctttctgaaattgtatagattcatctgcatataattccttagaaggagaatg |
267 |
Q |
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| T |
34069747 |
ttcacacacctttttgaaattgtatagattcatctgcatatagttccttagaaggagaatg |
34069807 |
T |
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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 224
Target Start/End: Original strand, 25214376 - 25214449
Alignment:
| Q |
151 |
tccttcaaaggattcaatatgatactttcaacataattcaagaattttggaagattttcacacacctttctgaa |
224 |
Q |
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||||||||||| | |||||| ||||||||||||||||||| |||||||||| | | |||| ||||||||||| |
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| T |
25214376 |
tccttcaaaggttccaatattgtactttcaacataattcaaaaattttggaaattgtacacaaacctttctgaa |
25214449 |
T |
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