View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8643_low_1 (Length: 618)
Name: NF8643_low_1
Description: NF8643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8643_low_1 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 590; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 590; E-Value: 0
Query Start/End: Original strand, 13 - 618
Target Start/End: Complemental strand, 34018711 - 34018106
Alignment:
| Q |
13 |
gatgaatgggtatgtaaaatgtttaggggttagtttgtgctctttagcgttttcagttaaatatatgttttattacttgagccctaaattgtctccaaat |
112 |
Q |
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| T |
34018711 |
gatgaatgggtatgtaaaatgtttaggggttagtttgtgctctttagcgttttcagttaaatatatgttttattacttgagccctaaattgtctccaaat |
34018612 |
T |
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| Q |
113 |
gtttatagaaagaaagaagggaaaagtacctggctcggcagcaagttcaagcagtagatacagtgtaaagcacaatttgtttttcttgctagtgtttttc |
212 |
Q |
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| T |
34018611 |
gtttatagaaagaaagaagggaaaagtacctggctcggcagcaagttcaagcagtagatacagtgtaaagcacaatttgtttttcttgctagtgtttttc |
34018512 |
T |
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| Q |
213 |
ttcagagaatgataaatcaagatgttattggtgttgatttgtcgccatcaaccttggatgcaattcaagatataacatagtctgttgatataattgtcaa |
312 |
Q |
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| T |
34018511 |
ttcagagaatgataaatcaagatgttattggtgttgatttgtcgccatcaaccttggatgcaattcaagatataacatagtctgttgatataattgtcaa |
34018412 |
T |
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| Q |
313 |
agttcttgttctttggatgaaaagtcatacatgtaaatagtagagtttggttgtttgtaaaataaattctagtcttccctgccatatttgagaaataatg |
412 |
Q |
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| T |
34018411 |
agttcttgttctttggatgaaaagtcatacatgtaaatagtagagtttggttgtttgtaaaataaatgctagtcttccctgccatatttgagaaataatg |
34018312 |
T |
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| Q |
413 |
ctaaaataacatattattcatgaccatatcattttttgtcgtgtatttttgttatgaacaaacacatacatcaatttcttcaaactcaatccaattttat |
512 |
Q |
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| T |
34018311 |
ctaaaataacatattattcatgaccatatcattttttgtcgtgtatttttgttatgaacaaacacatacatcaatttcttcaaactcaatccaattttat |
34018212 |
T |
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| Q |
513 |
aggatctagctattcttaagtcaacagtttattttagagaggaaaataagtatttccaaactcctgattagaaaaatagctaatatgcaggggccggggt |
612 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||| |
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| T |
34018211 |
aggatctagctattcttaagtcaacagtttattttagagaggaaaataagtatttccaaactcctgattagaaaaataactgatatgcaggggctggggt |
34018112 |
T |
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| Q |
613 |
tcgaac |
618 |
Q |
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|||||| |
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| T |
34018111 |
tcgaac |
34018106 |
T |
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