View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8643_low_10 (Length: 365)
Name: NF8643_low_10
Description: NF8643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8643_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 40426787 - 40427132
Alignment:
| Q |
1 |
atgaatctctggctaagcttttcccttcgtcttctttcggccataacatgatcttgagcctgaatagggtttctatttacagcagcaaccttgttctctc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
40426787 |
atgaatctctggctaagcttttcccttcgtcttctttcggccataacatgatcttgagcctgaatagggtttctatttacagcagaaaccttgttctctc |
40426886 |
T |
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| Q |
101 |
gtttataataatcaccttgagaaatcacacttccaaaattcaagttttcaccatacccgatctcggttttaggcttcttaacctttgaatcattattcga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40426887 |
gtttataataatcaccttgagaaatcacacttccaaaattcaagttttcaccatacccgatctcggttttaggcttcttaacctttgaatcattattcga |
40426986 |
T |
|
| Q |
201 |
gtaatcaaatgaaatgattttgggagaagccttgagtaatttagttggtggtgttgctgaggcaacagattgatctggactttgagtagggaaagaactg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40426987 |
gtaatcaaatgaaatgattttgggagaagccttgagtagtttagttggtggtgttgctgaggcaacagattgatctggactttgagtagggaaagaactg |
40427086 |
T |
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| Q |
301 |
ttctgtgtgctttcggaatggattcgcttgttgttgatgttggtat |
346 |
Q |
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| T |
40427087 |
ttctgtgtgctttcggaatggattcgcttgttgttgatgttggtat |
40427132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 40441875 - 40442220
Alignment:
| Q |
1 |
atgaatctctggctaagcttttcccttcgtcttctttcggccataacatgatcttgagcctgaatagggtttctatttacagcagcaaccttgttctctc |
100 |
Q |
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|||||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||||| |||||||||||||||||||||| |||||||||||||| |
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| T |
40441875 |
atgaatctctggctaagcttttcccttcgttttctttcggcgataacatgatctcgagcctgcatagggtttctatttacagcagaaaccttgttctctc |
40441974 |
T |
|
| Q |
101 |
gtttataataatcaccttgagaaatcacacttccaaaattcaagttttcaccatacccgatctcggttttaggcttcttaacctttgaatcattattcga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40441975 |
gtttataataatcaccttgagaaatcacacttccaaaattcaagttttcaccatacccgatctcggttttaggcttcttaacctttgaatcattattcga |
40442074 |
T |
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| Q |
201 |
gtaatcaaatgaaatgattttgggagaagccttgagtaatttagttggtggtgttgctgaggcaacagattgatctggactttgagtagggaaagaactg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40442075 |
gtaatcaaatgaaatgattttgggagaagccttgagtagtttagttggtggtgttgctgaggcaacagattgatctggactttgagtagggaaagaactg |
40442174 |
T |
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| Q |
301 |
ttctgtgtgctttcggaatggattcgcttgttgttgatgttggtat |
346 |
Q |
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| T |
40442175 |
ttctgtgtgctttcggaatggattcgcttgttgttgatgttggtat |
40442220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 4947384 - 4947339
Alignment:
| Q |
14 |
taagcttttcccttcgtcttctttcggccataacatgatcttgagc |
59 |
Q |
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||||||||||||||||| ||||||||||||| ||||| ||| |||| |
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| T |
4947384 |
taagcttttcccttcgttttctttcggccattacatgttctcgagc |
4947339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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