View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8643_low_12 (Length: 308)

Name: NF8643_low_12
Description: NF8643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8643_low_12
NF8643_low_12
[»] chr2 (17 HSPs)
chr2 (56-212)||(39292800-39292956)
chr2 (3-56)||(21471016-21471069)
chr2 (3-55)||(21471950-21472002)
chr2 (3-56)||(37547997-37548050)
chr2 (3-56)||(38834632-38834685)
chr2 (3-55)||(13134318-13134370)
chr2 (3-55)||(14573261-14573313)
chr2 (6-55)||(4479701-4479750)
chr2 (3-56)||(14573995-14574048)
chr2 (3-58)||(38834384-38834439)
chr2 (7-55)||(33433160-33433208)
chr2 (21-56)||(1164790-1164825)
chr2 (7-57)||(5276463-5276513)
chr2 (6-55)||(40992222-40992271)
chr2 (7-56)||(4478850-4478899)
chr2 (7-56)||(19521917-19521966)
chr2 (23-55)||(17069121-17069153)
[»] scaffold0311 (1 HSPs)
scaffold0311 (3-57)||(156-210)
[»] chr8 (21 HSPs)
chr8 (3-56)||(41859309-41859362)
chr8 (3-57)||(34992260-34992314)
chr8 (3-56)||(5034897-5034950)
chr8 (3-48)||(37639718-37639763)
chr8 (3-55)||(5035272-5035324)
chr8 (3-55)||(32536708-32536760)
chr8 (7-56)||(61453-61502)
chr8 (7-55)||(1365829-1365877)
chr8 (21-56)||(44098435-44098470)
chr8 (7-56)||(25876520-25876569)
chr8 (3-55)||(34992015-34992067)
chr8 (7-55)||(39254787-39254835)
chr8 (21-55)||(32536946-32536980)
chr8 (6-55)||(27918046-27918095)
chr8 (22-55)||(38023857-38023890)
chr8 (7-56)||(39255752-39255801)
chr8 (3-56)||(41860092-41860145)
chr8 (7-56)||(44751607-44751656)
chr8 (7-55)||(62240-62288)
chr8 (3-55)||(38023624-38023676)
chr8 (7-55)||(42345166-42345214)
[»] chr7 (25 HSPs)
chr7 (3-56)||(37468909-37468962)
chr7 (3-56)||(38778853-38778906)
chr7 (3-55)||(668179-668231)
chr7 (3-55)||(17145622-17145674)
chr7 (3-55)||(37469001-37469053)
chr7 (3-55)||(38779559-38779611)
chr7 (3-53)||(7677805-7677855)
chr7 (6-56)||(41194512-41194562)
chr7 (3-56)||(4261592-4261645)
chr7 (3-56)||(37864303-37864356)
chr7 (3-56)||(38071897-38071950)
chr7 (3-51)||(4261209-4261257)
chr7 (3-55)||(17145868-17145920)
chr7 (3-55)||(38072287-38072339)
chr7 (3-55)||(669099-669151)
chr7 (7-50)||(42455040-42455083)
chr7 (21-54)||(668420-668453)
chr7 (3-51)||(7677421-7677469)
chr7 (6-56)||(29006346-29006396)
chr7 (22-56)||(37864091-37864125)
chr7 (8-58)||(44909360-44909410)
chr7 (7-48)||(20890206-20890247)
chr7 (186-218)||(8638246-8638278)
chr7 (8-56)||(45887981-45888029)
chr7 (8-56)||(47331954-47332002)
[»] chr6 (23 HSPs)
chr6 (3-56)||(7193337-7193390)
chr6 (3-55)||(33480624-33480676)
chr6 (3-60)||(33018412-33018469)
chr6 (3-55)||(3543059-3543111)
chr6 (3-55)||(15083314-15083366)
chr6 (3-55)||(22579935-22579987)
chr6 (3-51)||(22582475-22582523)
chr6 (3-51)||(22587306-22587354)
chr6 (3-53)||(3542816-3542866)
chr6 (3-53)||(33479698-33479748)
chr6 (7-55)||(7531829-7531877)
chr6 (3-55)||(33018167-33018219)
chr6 (21-55)||(15082638-15082672)
chr6 (21-55)||(22580597-22580631)
chr6 (21-55)||(22587083-22587117)
chr6 (21-55)||(33479938-33479972)
chr6 (3-56)||(7193574-7193627)
chr6 (7-60)||(14337557-14337610)
chr6 (6-55)||(24125972-24126021)
chr6 (3-55)||(24126714-24126766)
chr6 (3-50)||(15082402-15082449)
chr6 (7-56)||(7532440-7532489)
chr6 (7-55)||(9574571-9574619)
[»] chr5 (22 HSPs)
chr5 (3-56)||(8204119-8204172)
chr5 (3-55)||(15184013-15184065)
chr5 (3-56)||(33002812-33002865)
chr5 (3-56)||(36626626-36626679)
chr5 (8-55)||(39950404-39950451)
chr5 (3-56)||(12190154-12190207)
chr5 (3-56)||(33001931-33001984)
chr5 (3-55)||(686417-686468)
chr5 (3-56)||(8040194-8040247)
chr5 (3-54)||(687344-687395)
chr5 (21-55)||(686667-686701)
chr5 (6-56)||(8040443-8040493)
chr5 (21-55)||(39950446-39950480)
chr5 (7-56)||(13654932-13654981)
chr5 (21-55)||(15183780-15183814)
chr5 (188-218)||(17703206-17703236)
chr5 (6-55)||(4608589-4608638)
chr5 (3-55)||(15183088-15183141)
chr5 (9-50)||(39167442-39167483)
chr5 (7-55)||(26688166-26688214)
chr5 (7-55)||(26957897-26957945)
chr5 (8-56)||(33284024-33284072)
[»] chr4 (42 HSPs)
chr4 (3-56)||(11417686-11417739)
chr4 (3-56)||(29651328-29651381)
chr4 (3-58)||(31836456-31836511)
chr4 (3-56)||(10425055-10425108)
chr4 (3-55)||(10424123-10424175)
chr4 (3-55)||(11417933-11417985)
chr4 (3-55)||(36865713-36865765)
chr4 (3-55)||(38694950-38695002)
chr4 (3-55)||(39523267-39523319)
chr4 (7-65)||(47198595-47198653)
chr4 (3-56)||(21166371-21166424)
chr4 (3-56)||(26611279-26611332)
chr4 (6-55)||(45235959-45236008)
chr4 (3-55)||(45230365-45230417)
chr4 (6-57)||(47377597-47377648)
chr4 (5-51)||(38143735-38143781)
chr4 (7-49)||(55159186-55159228)
chr4 (3-56)||(9939367-9939420)
chr4 (3-55)||(21165447-21165499)
chr4 (3-55)||(38694702-38694754)
chr4 (7-50)||(3848578-3848621)
chr4 (3-50)||(26610350-26610397)
chr4 (3-54)||(36864818-36864869)
chr4 (21-55)||(10424385-10424419)
chr4 (21-55)||(21166137-21166171)
chr4 (6-56)||(28684231-28684281)
chr4 (21-55)||(29650655-29650689)
chr4 (21-55)||(31836221-31836255)
chr4 (21-55)||(45235733-45235767)
chr4 (6-55)||(37275088-37275137)
chr4 (3-56)||(39522374-39522427)
chr4 (7-55)||(25371545-25371593)
chr4 (3-55)||(47376852-47376904)
chr4 (7-50)||(3847891-3847934)
chr4 (3-54)||(29650416-29650467)
chr4 (21-55)||(26611056-26611090)
chr4 (7-56)||(30478308-30478357)
chr4 (6-55)||(30808621-30808670)
chr4 (7-56)||(42544487-42544536)
chr4 (7-56)||(47199395-47199444)
chr4 (7-56)||(48013316-48013365)
chr4 (3-55)||(31835148-31835200)
[»] chr3 (36 HSPs)
chr3 (3-56)||(36750433-36750486)
chr3 (3-55)||(19132563-19132615)
chr3 (3-54)||(38922744-38922795)
chr3 (3-55)||(19132808-19132860)
chr3 (3-58)||(32490191-32490246)
chr3 (3-55)||(32489946-32489998)
chr3 (3-55)||(38923661-38923713)
chr3 (3-55)||(45242983-45243035)
chr3 (8-55)||(31556217-31556264)
chr3 (3-56)||(44687159-44687212)
chr3 (6-55)||(49757181-49757230)
chr3 (3-50)||(36750050-36750097)
chr3 (3-54)||(45242067-45242118)
chr3 (20-55)||(52491891-52491926)
chr3 (9-55)||(17226968-17227014)
chr3 (21-55)||(38923438-38923472)
chr3 (21-55)||(45242307-45242341)
chr3 (3-56)||(41755498-41755551)
chr3 (3-56)||(41756428-41756481)
chr3 (5-57)||(52492277-52492329)
chr3 (8-55)||(21811879-21811926)
chr3 (8-55)||(31556188-31556235)
chr3 (6-57)||(37105076-37105127)
chr3 (21-55)||(3971233-3971267)
chr3 (21-55)||(3998614-3998648)
chr3 (6-56)||(14667296-14667345)
chr3 (188-218)||(16723863-16723893)
chr3 (21-55)||(41755729-41755763)
chr3 (6-56)||(49756274-49756324)
chr3 (3-56)||(3971898-3971951)
chr3 (3-56)||(3997927-3997980)
chr3 (14-55)||(17227955-17227996)
chr3 (7-56)||(43638078-43638127)
chr3 (3-56)||(44686254-44686306)
chr3 (7-55)||(39901846-39901894)
chr3 (6-54)||(42145277-42145325)
[»] chr1 (29 HSPs)
chr1 (3-56)||(51974436-51974489)
chr1 (3-55)||(16270207-16270259)
chr1 (3-55)||(23440861-23440913)
chr1 (3-56)||(43737974-43738027)
chr1 (3-56)||(48972441-48972494)
chr1 (3-55)||(9948883-9948935)
chr1 (3-53)||(38931243-38931293)
chr1 (6-55)||(193850-193899)
chr1 (3-55)||(23440617-23440669)
chr1 (3-55)||(43737729-43737781)
chr1 (7-56)||(51987826-51987875)
chr1 (3-55)||(9947995-9948047)
chr1 (3-55)||(16271144-16271196)
chr1 (3-55)||(48971705-48971757)
chr1 (3-55)||(50827087-50827138)
chr1 (3-55)||(51975223-51975275)
chr1 (6-56)||(1012546-1012596)
chr1 (21-55)||(16270901-16270935)
chr1 (21-55)||(38930574-38930608)
chr1 (7-56)||(35616775-35616824)
chr1 (7-55)||(8560839-8560887)
chr1 (3-55)||(38930312-38930364)
chr1 (7-55)||(51988464-51988512)
chr1 (3-41)||(6075988-6076026)
chr1 (21-55)||(51974979-51975013)
chr1 (187-224)||(10682851-10682888)
chr1 (7-55)||(194701-194749)
chr1 (7-55)||(37874064-37874112)
chr1 (9-57)||(48869767-48869815)
[»] scaffold0041 (2 HSPs)
scaffold0041 (3-55)||(27221-27273)
scaffold0041 (3-55)||(27571-27623)
[»] scaffold1037 (1 HSPs)
scaffold1037 (7-56)||(2899-2948)
[»] scaffold1031 (1 HSPs)
scaffold1031 (7-56)||(3018-3067)


Alignment Details
Target: chr2 (Bit Score: 145; Significance: 3e-76; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 56 - 212
Target Start/End: Complemental strand, 39292956 - 39292800
Alignment:
Q  56 tcactaatattttgtaagaggttttctctttctctaaacttcaaatagacttttctgtaaaatttatttcctccagcaaagattttcctttctcttttat 155  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  39292956 tcactaatattttgtaagaggttttctctttctctaaacttcaaatagacttttctgcaaaatttatttcctccaccaaagattttcctttctcttttat 39292857  T
Q  156 cttctaaccaacctttttaggaattcaacgaaaatttgtgcgaaccaattcacaaaa 212  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  39292856 cttctaatcaacctttttaggaattcaacgaaaatttgtgcgaaccaattcacaaaa 39292800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 21471069 - 21471016
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatggcacct 56  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  21471069 atcaactttcccatggtgggaaagaactctcctttcccaaattaaatggcacct 21471016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 21471950 - 21472002
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatggcacc 55  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  21471950 atcaactttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 21472002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 37548050 - 37547997
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatggcacct 56  Q
    ||||||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  37548050 atcaactttcccatgatgggaaagaactctcctttcccaaattaaatggcacct 37547997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 38834632 - 38834685
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatggcacct 56  Q
    ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  38834632 atcaactttcccacggtaggaaaaaactctcctttcccaaattaaatggcacct 38834685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 13134370 - 13134318
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatggcacc 55  Q
    ||||||||||| ||||| |||||||||||||||||||||||||||||||||||    
T  13134370 atcaactttcctatggtgggaaagaactctcctttcccaaattaaatggcacc 13134318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 14573313 - 14573261
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatggcacc 55  Q
    ||||||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  14573313 atcaactttcccatggtgggaaaaaactctcctttcccaaattaaatggcacc 14573261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 6 - 55
Target Start/End: Original strand, 4479701 - 4479750
Alignment:
Q  6 aactttcccatggtaggaaagaactctcctttcccaaattaaatggcacc 55  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  4479701 aactttcccatggtgagaaagaactctcctttcccaaattaaatggcacc 4479750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 14573995 - 14574048
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatggcacct 56  Q
    ||||||||||  ||||| ||||||||||||||||||||||||||||||||||||    
T  14573995 atcaactttcttatggtgggaaagaactctcctttcccaaattaaatggcacct 14574048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 58
Target Start/End: Complemental strand, 38834439 - 38834384
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatggcacctca 58  Q
    |||||||||||| |||| |||||| || ||||||||||||||||||||||||||||    
T  38834439 atcaactttcccgtggtgggaaagtaccctcctttcccaaattaaatggcacctca 38834384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 33433160 - 33433208
Alignment:
Q  7 actttcccatggtaggaaagaactctcctttcccaaattaaatggcacc 55  Q
    ||||||||||||| |||||||||||||||||| ||||||||| ||||||    
T  33433160 actttcccatggtgggaaagaactctcctttctcaaattaaacggcacc 33433208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 56
Target Start/End: Original strand, 1164790 - 1164825
Alignment:
Q  21 ggaaagaactctcctttcccaaattaaatggcacct 56  Q
    ||||||||||||||||||||||||||||||||||||    
T  1164790 ggaaagaactctcctttcccaaattaaatggcacct 1164825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 57
Target Start/End: Complemental strand, 5276513 - 5276463
Alignment:
Q  7 actttcccatggtaggaaagaactctcctttcccaaattaaatggcacctc 57  Q
    ||||||||||||| |||||||| ||||||||||||| ||||||| ||||||    
T  5276513 actttcccatggtgggaaagaagtctcctttcccaagttaaatgccacctc 5276463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 6 - 55
Target Start/End: Complemental strand, 40992271 - 40992222
Alignment:
Q  6 aactttcccatggtaggaaagaactctcctttcccaaattaaatggcacc 55  Q
    |||||||||||||||||||| |||   |||||||||||||||||||||||    
T  40992271 aactttcccatggtaggaaaaaacaaacctttcccaaattaaatggcacc 40992222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 4478899 - 4478850
Alignment:
Q  7 actttcccatggtaggaaagaactctcctttcccaaattaaatggcacct 56  Q
    ||||||||||| | |||||||| | | |||||||||||||||||||||||    
T  4478899 actttcccatgatgggaaagaagtttgctttcccaaattaaatggcacct 4478850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 19521917 - 19521966
Alignment:
Q  7 actttcccatggtaggaaagaactctcctttcccaaattaaatggcacct 56  Q
    ||||||||||| | |||||||| | | |||||||||||||||||||||||    
T  19521917 actttcccatgatgggaaagaagtttgctttcccaaattaaatggcacct 19521966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 55
Target Start/End: Complemental strand, 17069153 - 17069121
Alignment:
Q  23 aaagaactctcctttcccaaattaaatggcacc 55  Q
    |||||||||||||||| ||||||||||||||||    
T  17069153 aaagaactctcctttctcaaattaaatggcacc 17069121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 156 - 210
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatggcacctc 57  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  156 atcaactttcccatggtgggaaagaactctcctttcccaaattaaatggcacctc 210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 41859362 - 41859309
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatggcacct 56  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  41859362 atcaactttcccatggtgggaaagaactctcctttcccaaattaaatggcacct 41859309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 34992260 - 34992314
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatggcacctc 57  Q
    ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  34992260 atcaactttcccatggtgggaaaaaactctcctttcccaaattaaatggcacctc 34992314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 5034950 - 5034897
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatggcacct 56  Q
    ||||||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  5034950 atcaactttcccatggtggaaaagaactctcctttcccaaattaaatggcacct 5034897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 37639763 - 37639718
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaa 48  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||    
T  37639763 atcaactttcccatggtgggaaagaactctcctttcccaaattaaa 37639718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 5035272 - 5035324
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatggcacc 55  Q
    ||||||||||| ||||| | |||||||||||||||||||||||||||||||||    
T  5035272 atcaactttcctatggtggaaaagaactctcctttcccaaattaaatggcacc 5035324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 32536760 - 32536708
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatggcacc 55  Q
    ||||||||||||||||| ||||||||||||| ||||| |||||||||||||||    
T  32536760 atcaactttcccatggtgggaaagaactctcatttcctaaattaaatggcacc 32536708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 61502 - 61453
Alignment:
Q  7 actttcccatggtaggaaagaactctcctttcccaaattaaatggcacct 56  Q
    ||||||||||||| |||||||| ||||||||||||||||||||| |||||    
T  61502 actttcccatggtgggaaagaagtctcctttcccaaattaaatgccacct 61453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 1365877 - 1365829
Alignment:
Q  7 actttcccatggtaggaaagaactctcctttcccaaattaaatggcacc 55  Q
    ||||||||||||| |||||||| ||||||||||||||||||||| ||||    
T  1365877 actttcccatggtgggaaagaagtctcctttcccaaattaaatgccacc 1365829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 56
Target Start/End: Original strand, 44098435 - 44098470
Alignment:
Q  21 ggaaagaactctcctttcccaaattaaatggcacct 56  Q
    ||||||||||||||||||||||||||||||||||||    
T  44098435 ggaaagaactctcctttcccaaattaaatggcacct 44098470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 25876569 - 25876520
Alignment:
Q  7 actttcccatggtaggaaagaactctcctttcccaaattaaatggcacct 56  Q
    ||||||||||||| ||||| || ||| |||||||||||||||||||||||    
T  25876569 actttcccatggtgggaaaaaaatcttctttcccaaattaaatggcacct 25876520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 34992067 - 34992015
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatggcacc 55  Q
    ||||||||| ||||||| | ||| ||||||| |||||||||||||||||||||    
T  34992067 atcaacttttccatggtggaaaataactctcgtttcccaaattaaatggcacc 34992015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 39254835 - 39254787
Alignment:
Q  7 actttcccatggtaggaaagaactctcctttcccaaattaaatggcacc 55  Q
    ||||||| ||||| |||||||| ||||||||||||||||||||| ||||    
T  39254835 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 39254787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 32536946 - 32536980
Alignment:
Q  21 ggaaagaactctcctttcccaaattaaatggcacc 55  Q
    ||||||||||||||||| |||||||||||||||||    
T  32536946 ggaaagaactctccttttccaaattaaatggcacc 32536980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 55
Target Start/End: Original strand, 27918046 - 27918095
Alignment:
Q  6 aactttcccatggtaggaaagaactctcctttcccaaattaaatggcacc 55  Q
    |||||||||||||| ||||| || |||| |||||||||||||| ||||||    
T  27918046 aactttcccatggtgggaaaaaagtctcatttcccaaattaaacggcacc 27918095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 55
Target Start/End: Original strand, 38023857 - 38023890
Alignment:
Q  22 gaaagaactctcctttcccaaattaaatggcacc 55  Q
    |||||||||||||||||||||||||||| |||||    
T  38023857 gaaagaactctcctttcccaaattaaatagcacc 38023890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 39255752 - 39255801
Alignment:
Q  7 actttcccatggtaggaaagaactctcctttcccaaattaaatggcacct 56  Q
    ||||||||||||| |||||||| |||| |||||||| ||||||| |||||    
T  39255752 actttcccatggtgggaaagaagtctcatttcccaagttaaatgccacct 39255801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 41860092 - 41860145
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatggcacct 56  Q
    ||||||||| |||| |||  ||| |||||| |||||||||||||||||||||||    
T  41860092 atcaacttttccatagtaaaaaataactcttctttcccaaattaaatggcacct 41860145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 44751656 - 44751607
Alignment:
Q  7 actttcccatggtaggaaagaactctcctttcccaaattaaatggcacct 56  Q
    ||||||||||| | |||||||| ||||||||||||| ||||||| |||||    
T  44751656 actttcccatgatgggaaagaagtctcctttcccaagttaaatgccacct 44751607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 62240 - 62288
Alignment:
Q  7 actttcccatggtaggaaagaactctcctttcccaaattaaatggcacc 55  Q
    ||||||| ||||| |||||||| ||||||||| ||||||||||| ||||    
T  62240 actttcctatggtgggaaagaagtctcctttctcaaattaaatgtcacc 62288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 38023676 - 38023624
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatggcacc 55  Q
    ||||||||| ||||| | | |||||| ||||||||||||||||||||| ||||    
T  38023676 atcaacttttccatgatggaaaagaattctcctttcccaaattaaatgacacc 38023624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 42345214 - 42345166
Alignment:
Q  7 actttcccatggtaggaaagaactctcctttcccaaattaaatggcacc 55  Q
    ||||||||||| | |||||||| | | ||||||||||||||||||||||    
T  42345214 actttcccatgatgggaaagaagtttactttcccaaattaaatggcacc 42345166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 37468962 - 37468909
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatggcacct 56  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  37468962 atcaactttcccatggtgggaaagaactctcctttcccaaattaaatggcacct 37468909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 38778906 - 38778853
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatggcacct 56  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  38778906 atcaactttcccatggtgggaaagaactctcctttcccaaattaaatggcacct 38778853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 668231 - 668179
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatggcacc 55  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  668231 atcaactttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 668179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 17145674 - 17145622
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatggcacc 55  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  17145674 atcaactttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 17145622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 37469001 - 37469053
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatggcacc 55  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  37469001 atcaactttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 37469053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 38779559 - 38779611
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatggcacc 55  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  38779559 atcaactttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 38779611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 7677805 - 7677855
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatggca 53  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  7677805 atcaactttcccatggtgggaaagaactctcctttcccaaattaaatggca 7677855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 6 - 56
Target Start/End: Complemental strand, 41194562 - 41194512
Alignment:
Q  6 aactttcccatggtaggaaagaactctcctttcccaaattaaatggcacct 56  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  41194562 aactttcccatggtgggaaagaactctcctttcccaaattaaatggcacct 41194512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 4261592 - 4261645
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatggcacct 56  Q
    ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  4261592 atcaactttcccatggtgggaaagaactctcctttcctaaattaaatggcacct 4261645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 37864303 - 37864356
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatggcacct 56  Q
    ||||||||||||||||| ||||||||||||  ||||||||||||||||||||||    
T  37864303 atcaactttcccatggtgggaaagaactcttatttcccaaattaaatggcacct 37864356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 38071950 - 38071897
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatggcacct 56  Q
    ||||||||||||||| | ||||||||||||||||||| ||||||||||||||||    
T  38071950 atcaactttcccatgatgggaaagaactctcctttcctaaattaaatggcacct 38071897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 4261257 - 4261209
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatgg 51  Q
    ||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  4261257 atcaactttcccatggtagaaaagaactctcctttcctaaattaaatgg 4261209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 17145868 - 17145920
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatggcacc 55  Q
    |||||||||||||| |||  |||||||||||||||||||||||||||||||||    
T  17145868 atcaactttcccatagtaaaaaagaactctcctttcccaaattaaatggcacc 17145920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 38072287 - 38072339
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatggcacc 55  Q
    ||||||||||||||||| | ||||||||||| |||||||||||||||||||||    
T  38072287 atcaactttcccatggtggaaaagaactctcatttcccaaattaaatggcacc 38072339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 669099 - 669151
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatggcacc 55  Q
    ||||||||||| ||||| ||||| ||||||| |||||||||||||||||||||    
T  669099 atcaactttcctatggtgggaaaaaactctcatttcccaaattaaatggcacc 669151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 50
Target Start/End: Complemental strand, 42455083 - 42455040
Alignment:
Q  7 actttcccatggtaggaaagaactctcctttcccaaattaaatg 50  Q
    ||||||||||||||| |||||| |||||||||||||||||||||    
T  42455083 actttcccatggtagaaaagaagtctcctttcccaaattaaatg 42455040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 668420 - 668453
Alignment:
Q  21 ggaaagaactctcctttcccaaattaaatggcac 54  Q
    ||||||||||||||||||||||||||||||||||    
T  668420 ggaaagaactctcctttcccaaattaaatggcac 668453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 7677469 - 7677421
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatgg 51  Q
    |||||||||  |||||| |||||||| ||||||||||||||||||||||    
T  7677469 atcaactttttcatggtgggaaagaattctcctttcccaaattaaatgg 7677421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 56
Target Start/End: Complemental strand, 29006396 - 29006346
Alignment:
Q  6 aactttcccatggtaggaaagaactctcctttcccaaattaaatggcacct 56  Q
    |||||||||||||| ||||| |||   ||||||||||||||||||||||||    
T  29006396 aactttcccatggtgggaaaaaacaagcctttcccaaattaaatggcacct 29006346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 56
Target Start/End: Complemental strand, 37864125 - 37864091
Alignment:
Q  22 gaaagaactctcctttcccaaattaaatggcacct 56  Q
    ||||||||| |||||||||||||||||||||||||    
T  37864125 gaaagaactttcctttcccaaattaaatggcacct 37864091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 44909360 - 44909410
Alignment:
Q  8 ctttcccatggtaggaaagaactctcctttcccaaattaaatggcacctca 58  Q
    |||||||||||| ||||| ||||  |||||||||||||||| |||||||||    
T  44909360 ctttcccatggtgggaaaaaacttacctttcccaaattaaacggcacctca 44909410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 20890247 - 20890206
Alignment:
Q  7 actttcccatggtaggaaagaactctcctttcccaaattaaa 48  Q
    ||||||||||||| ||||| |||| |||||||||||||||||    
T  20890247 actttcccatggtgggaaaaaactgtcctttcccaaattaaa 20890206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 218
Target Start/End: Original strand, 8638246 - 8638278
Alignment:
Q  186 aaaatttgtgcgaaccaattcacaaaagtacca 218  Q
    ||||||||| |||||||||||||||||||||||    
T  8638246 aaaatttgttcgaaccaattcacaaaagtacca 8638278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 45887981 - 45888029
Alignment:
Q  8 ctttcccatggtaggaaagaactctcctttcccaaattaaatggcacct 56  Q
    |||||||||||| ||||| ||||  |||||||||||||||||| |||||    
T  45887981 ctttcccatggtgggaaaaaactagcctttcccaaattaaatgccacct 45888029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 47331954 - 47332002
Alignment:
Q  8 ctttcccatggtaggaaagaactctcctttcccaaattaaatggcacct 56  Q
    |||||||||||| ||||| ||||  |||||||||||||||||| |||||    
T  47331954 ctttcccatggtgggaaaaaactagcctttcccaaattaaatgtcacct 47332002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 7193390 - 7193337
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatggcacct 56  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  7193390 atcaactttcccatggtgggaaagaactctcctttcccaaattaaatggcacct 7193337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 33480624 - 33480676
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatggcacc 55  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  33480624 atcaactttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 33480676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 33018412 - 33018469
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatggcacctcact 60  Q
    ||||||||||||||||| |||||||||||||||||||||||||||| | |||||||||    
T  33018412 atcaactttcccatggtgggaaagaactctcctttcccaaattaaacgacacctcact 33018469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 3543059 - 3543111
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatggcacc 55  Q
    ||||||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  3543059 atcaactttcccatggtgggaaaaaactctcctttcccaaattaaatggcacc 3543111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 15083314 - 15083366
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatggcacc 55  Q
    |||||||||| |||||| |||||||||||||||||||||||||||||||||||    
T  15083314 atcaactttctcatggtgggaaagaactctcctttcccaaattaaatggcacc 15083366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 22579987 - 22579935
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatggcacc 55  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||||||||    
T  22579987 atcaactttcccatggtggaaaagaactctcctttcccaaattaaatggcacc 22579935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 22582475 - 22582523
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatgg 51  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  22582475 atcaactttcccatggtgggaaagaactctcctttcccaaattaaatgg 22582523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 22587306 - 22587354
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatgg 51  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  22587306 atcaactttcccatggtgggaaagaactctcctttcccaaattaaatgg 22587354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 3542866 - 3542816
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatggca 53  Q
    ||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  3542866 atcaactttcccatggtgggaaaaaactctcctttcccaaattaaatggca 3542816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 33479748 - 33479698
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatggca 53  Q
    ||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  33479748 atcaactttcccatggtgggaaataactctcctttcccaaattaaatggca 33479698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 7531877 - 7531829
Alignment:
Q  7 actttcccatggtaggaaagaactctcctttcccaaattaaatggcacc 55  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  7531877 actttcccatggtaggaaagaagtctcctttcccaaattaaatgccacc 7531829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 33018219 - 33018167
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatggcacc 55  Q
    ||||||||||| ||| | |||||||||||||||||||||||||||||||||||    
T  33018219 atcaactttccaatgatgggaaagaactctcctttcccaaattaaatggcacc 33018167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 15082638 - 15082672
Alignment:
Q  21 ggaaagaactctcctttcccaaattaaatggcacc 55  Q
    |||||||||||||||||||||||||||||||||||    
T  15082638 ggaaagaactctcctttcccaaattaaatggcacc 15082672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 55
Target Start/End: Complemental strand, 22580631 - 22580597
Alignment:
Q  21 ggaaagaactctcctttcccaaattaaatggcacc 55  Q
    |||||||||||||||||||||||||||||||||||    
T  22580631 ggaaagaactctcctttcccaaattaaatggcacc 22580597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 55
Target Start/End: Complemental strand, 22587117 - 22587083
Alignment:
Q  21 ggaaagaactctcctttcccaaattaaatggcacc 55  Q
    |||||||||||||||||||||||||||||||||||    
T  22587117 ggaaagaactctcctttcccaaattaaatggcacc 22587083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 33479938 - 33479972
Alignment:
Q  21 ggaaagaactctcctttcccaaattaaatggcacc 55  Q
    |||||||||||||||||||||||||||||||||||    
T  33479938 ggaaagaactctcctttcccaaattaaatggcacc 33479972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 7193574 - 7193627
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatggcacct 56  Q
    ||||||||||||||| | | |||||||||| ||||| |||||||||||||||||    
T  7193574 atcaactttcccatgatggaaaagaactctactttctcaaattaaatggcacct 7193627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 14337557 - 14337610
Alignment:
Q  7 actttcccatggtaggaaagaactctcctttcccaaattaaatggcacctcact 60  Q
    ||||||||||| | |||||||| | | |||||||||||||||||||||||||||    
T  14337557 actttcccatgatgggaaagaagtttgctttcccaaattaaatggcacctcact 14337610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 6 - 55
Target Start/End: Complemental strand, 24126021 - 24125972
Alignment:
Q  6 aactttcccatggtaggaaagaactctcctttcccaaattaaatggcacc 55  Q
    |||||||||||||| ||||| ||||| |||||||||||||||||| ||||    
T  24126021 aactttcccatggtgggaaacaactcccctttcccaaattaaatgccacc 24125972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 24126714 - 24126766
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatggcacc 55  Q
    ||||||||||||||| | ||||| ||||| |||||||||||||||||| ||||    
T  24126714 atcaactttcccatgatgggaaacaactcccctttcccaaattaaatgccacc 24126766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 50
Target Start/End: Complemental strand, 15082449 - 15082402
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatg 50  Q
    ||||||||||||||| | | ||||||||||| ||||||||||||||||    
T  15082449 atcaactttcccatgatggaaaagaactctcatttcccaaattaaatg 15082402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 7532440 - 7532489
Alignment:
Q  7 actttcccatggtaggaaagaactctcctttcccaaattaaatggcacct 56  Q
    |||||||||||||   |||||| ||||||||||||||||||||| |||||    
T  7532440 actttcccatggtgaaaaagaagtctcctttcccaaattaaatgccacct 7532489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 9574571 - 9574619
Alignment:
Q  7 actttcccatggtaggaaagaactctcctttcccaaattaaatggcacc 55  Q
    ||||||| ||||| |||||||| ||||||||||||| ||||||| ||||    
T  9574571 actttcctatggtgggaaagaagtctcctttcccaagttaaatgccacc 9574619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 8204172 - 8204119
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatggcacct 56  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  8204172 atcaactttcccatggtgggaaagaactctcctttcccaaattaaatggcacct 8204119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 15184013 - 15184065
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatggcacc 55  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  15184013 atcaactttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 15184065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 33002812 - 33002865
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatggcacct 56  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| |||||    
T  33002812 atcaactttcccatggtgggaaagaactctcctttcccaaattaaatgacacct 33002865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 36626626 - 36626679
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatggcacct 56  Q
    ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  36626626 atcaactttcccatggtgggaaagaactctcatttcccaaattaaatggcacct 36626679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 8 - 55
Target Start/End: Complemental strand, 39950451 - 39950404
Alignment:
Q  8 ctttcccatggtaggaaagaactctcctttcccaaattaaatggcacc 55  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||    
T  39950451 ctttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 39950404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 12190154 - 12190207
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatggcacct 56  Q
    ||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||    
T  12190154 atcaactttcccatggtgggaaaaaactctcttttcccaaattaaatggcacct 12190207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 33001984 - 33001931
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatggcacct 56  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||    
T  33001984 atcaacttttccatggtgggaaagaactctcctttcccaaattaaatggtacct 33001931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 686468 - 686417
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatggcacc 55  Q
    ||||||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  686468 atcaactttcccatggtgggaaa-aactctcctttcccaaattaaatggcacc 686417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 8040247 - 8040194
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatggcacct 56  Q
    ||||||||||||| | | |||||||||| |||||||||||||||||||||||||    
T  8040247 atcaactttcccacgatgggaaagaactgtcctttcccaaattaaatggcacct 8040194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 687344 - 687395
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatggcac 54  Q
    ||||||||| |||| || | ||||||||||||||||||||||||||||||||    
T  687344 atcaacttttccatagtggaaaagaactctcctttcccaaattaaatggcac 687395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 686667 - 686701
Alignment:
Q  21 ggaaagaactctcctttcccaaattaaatggcacc 55  Q
    |||||||||||||||||||||||||||||||||||    
T  686667 ggaaagaactctcctttcccaaattaaatggcacc 686701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 56
Target Start/End: Original strand, 8040443 - 8040493
Alignment:
Q  6 aactttcccatggtaggaaagaactctcctttcccaaattaaatggcacct 56  Q
    |||||||||| ||| |||||||| | |||||||||||||||||||||||||    
T  8040443 aactttcccacggtgggaaagaaatttcctttcccaaattaaatggcacct 8040493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 39950446 - 39950480
Alignment:
Q  21 ggaaagaactctcctttcccaaattaaatggcacc 55  Q
    |||||||||||||||||||||||||||||||||||    
T  39950446 ggaaagaactctcctttcccaaattaaatggcacc 39950480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 13654981 - 13654932
Alignment:
Q  7 actttcccatggtaggaaagaactctcctttcccaaattaaatggcacct 56  Q
    ||||||| ||||| |||||||| ||||||||||||||||||||| |||||    
T  13654981 actttcctatggtgggaaagaagtctcctttcccaaattaaatgtcacct 13654932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 55
Target Start/End: Complemental strand, 15183814 - 15183780
Alignment:
Q  21 ggaaagaactctcctttcccaaattaaatggcacc 55  Q
    |||||||||||||||||||||||| ||||||||||    
T  15183814 ggaaagaactctcctttcccaaatcaaatggcacc 15183780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 218
Target Start/End: Complemental strand, 17703236 - 17703206
Alignment:
Q  188 aatttgtgcgaaccaattcacaaaagtacca 218  Q
    |||||||||||||||||||||||||||||||    
T  17703236 aatttgtgcgaaccaattcacaaaagtacca 17703206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 55
Target Start/End: Original strand, 4608589 - 4608638
Alignment:
Q  6 aactttcccatggtaggaaagaactctcctttcccaaattaaatggcacc 55  Q
    |||||||||||||| ||||| |||  |||||||||| |||||||||||||    
T  4608589 aactttcccatggtgggaaataacattcctttcccagattaaatggcacc 4608638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 15183141 - 15183088
Alignment:
Q  3 atcaactttcccatggtaggaaagaa-ctctcctttcccaaattaaatggcacc 55  Q
    |||||||||| |||| | ||||| || |||||||||||||||||||||||||||    
T  15183141 atcaactttctcatgatgggaaataaactctcctttcccaaattaaatggcacc 15183088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 39167442 - 39167483
Alignment:
Q  9 tttcccatggtaggaaagaactctcctttcccaaattaaatg 50  Q
    ||||||||| | |||||||| |||||||||||||||||||||    
T  39167442 tttcccatgatgggaaagaagtctcctttcccaaattaaatg 39167483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 26688214 - 26688166
Alignment:
Q  7 actttcccatggtaggaaagaactctcctttcccaaattaaatggcacc 55  Q
    ||||||||||| | |||||||| | | ||||||||||||||||||||||    
T  26688214 actttcccatgatgggaaagaagtttgctttcccaaattaaatggcacc 26688166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 26957945 - 26957897
Alignment:
Q  7 actttcccatggtaggaaagaactctcctttcccaaattaaatggcacc 55  Q
    ||||||||||| | |||||||| | | ||||||||||||||||||||||    
T  26957945 actttcccatgatgggaaagaagtttgctttcccaaattaaatggcacc 26957897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 33284024 - 33284072
Alignment:
Q  8 ctttcccatggtaggaaagaactctcctttcccaaattaaatggcacct 56  Q
    |||||||||||| ||| | ||||  ||||||||||||||||||||||||    
T  33284024 ctttcccatggtgggataaaactaacctttcccaaattaaatggcacct 33284072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 42)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 11417739 - 11417686
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatggcacct 56  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  11417739 atcaactttcccatggtgggaaagaactctcctttcccaaattaaatggcacct 11417686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 29651328 - 29651381
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatggcacct 56  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  29651328 atcaactttcccatggtgggaaagaactctcctttcccaaattaaatggcacct 29651381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 3 - 58
Target Start/End: Original strand, 31836456 - 31836511
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatggcacctca 58  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  31836456 atcaactttcccatggtgggaaagaactctcctttctcaaattaaatggcacctca 31836511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 10425055 - 10425108
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatggcacct 56  Q
    ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  10425055 atcaactttcccatggtgggaaagaactctcctttcctaaattaaatggcacct 10425108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 10424175 - 10424123
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatggcacc 55  Q
    ||||||||||| ||||| |||||||||||||||||||||||||||||||||||    
T  10424175 atcaactttcctatggtgggaaagaactctcctttcccaaattaaatggcacc 10424123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 11417933 - 11417985
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatggcacc 55  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| ||||    
T  11417933 atcaactttcccatggtgggaaagaactctcctttcccaaattaaatgacacc 11417985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 36865713 - 36865765
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatggcacc 55  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| ||||    
T  36865713 atcaactttcccatggtgggaaagaactctcctttcccaaattaaatgtcacc 36865765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 38694950 - 38695002
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatggcacc 55  Q
    |||||||||| |||||| |||||||||||||||||||||||||||||||||||    
T  38694950 atcaactttctcatggtgggaaagaactctcctttcccaaattaaatggcacc 38695002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 39523267 - 39523319
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatggcacc 55  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||||||||    
T  39523267 atcaactttcccatggtggaaaagaactctcctttcccaaattaaatggcacc 39523319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 65
Target Start/End: Complemental strand, 47198653 - 47198595
Alignment:
Q  7 actttcccatggtaggaaagaactctcctttcccaaattaaatggcacctcactaatat 65  Q
    ||||||||||||| |||||||| ||||||||||||||||||||| ||||||||| ||||    
T  47198653 actttcccatggtgggaaagaagtctcctttcccaaattaaatgtcacctcacttatat 47198595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 21166371 - 21166424
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatggcacct 56  Q
    ||||||||||||||| | |||||||||||||||||| |||||||||||||||||    
T  21166371 atcaactttcccatgatgggaaagaactctcctttctcaaattaaatggcacct 21166424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 26611279 - 26611332
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatggcacct 56  Q
    ||||||||||||||||| ||||| |||||||||||||||||||||||| |||||    
T  26611279 atcaactttcccatggtgggaaaaaactctcctttcccaaattaaatgacacct 26611332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 6 - 55
Target Start/End: Original strand, 45235959 - 45236008
Alignment:
Q  6 aactttcccatggtaggaaagaactctcctttcccaaattaaatggcacc 55  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  45235959 aactttcccatggtgggaaagaactctccttttccaaattaaatggcacc 45236008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 45230417 - 45230365
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatggcacc 55  Q
    ||||||||||||||||| ||||||||||||| |||||| ||||||||||||||    
T  45230417 atcaactttcccatggtgggaaagaactctcttttcccgaattaaatggcacc 45230365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 6 - 57
Target Start/End: Original strand, 47377597 - 47377648
Alignment:
Q  6 aactttcccatggtaggaaagaactctcctttcccaaattaaatggcacctc 57  Q
    |||||||||||||| ||||| ||||| |||||||||||||||||||||||||    
T  47377597 aactttcccatggtgggaaacaactcccctttcccaaattaaatggcacctc 47377648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 5 - 51
Target Start/End: Original strand, 38143735 - 38143781
Alignment:
Q  5 caactttcccatggtaggaaagaactctcctttcccaaattaaatgg 51  Q
    ||||||||||||||| ||||||||||||| |||||||||||||||||    
T  38143735 caactttcccatggtgggaaagaactctcatttcccaaattaaatgg 38143781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 7 - 49
Target Start/End: Complemental strand, 55159228 - 55159186
Alignment:
Q  7 actttcccatggtaggaaagaactctcctttcccaaattaaat 49  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  55159228 actttcccatggtaggaaagaagtctcctttcccaaattaaat 55159186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 9939367 - 9939420
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatggcacct 56  Q
    ||||||||| ||||||| ||||||||||| |||||| |||||||||||||||||    
T  9939367 atcaacttttccatggtgggaaagaactcccctttctcaaattaaatggcacct 9939420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 21165499 - 21165447
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatggcacc 55  Q
    |||||||||| |||||| |||||||||| | ||||||||||||||||||||||    
T  21165499 atcaactttctcatggtgggaaagaactattctttcccaaattaaatggcacc 21165447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 38694754 - 38694702
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatggcacc 55  Q
    ||||||||| ||||| | ||||||||||||||||| |||||||||||||||||    
T  38694754 atcaacttttccatgctgggaaagaactctccttttccaaattaaatggcacc 38694702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 50
Target Start/End: Original strand, 3848578 - 3848621
Alignment:
Q  7 actttcccatggtaggaaagaactctcctttcccaaattaaatg 50  Q
    ||||||||||||| |||||||| |||||||||||||||||||||    
T  3848578 actttcccatggtgggaaagaagtctcctttcccaaattaaatg 3848621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 50
Target Start/End: Complemental strand, 26610397 - 26610350
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatg 50  Q
    ||||| ||||||||||| ||||||||||||| ||||||||||||||||    
T  26610397 atcaattttcccatggtgggaaagaactctcatttcccaaattaaatg 26610350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 54
Target Start/End: Complemental strand, 36864869 - 36864818
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatggcac 54  Q
    |||||||||| ||||||  |||||||||||||||||||||||||||| ||||    
T  36864869 atcaactttctcatggtgagaaagaactctcctttcccaaattaaatagcac 36864818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 10424385 - 10424419
Alignment:
Q  21 ggaaagaactctcctttcccaaattaaatggcacc 55  Q
    |||||||||||||||||||||||||||||||||||    
T  10424385 ggaaagaactctcctttcccaaattaaatggcacc 10424419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 55
Target Start/End: Complemental strand, 21166171 - 21166137
Alignment:
Q  21 ggaaagaactctcctttcccaaattaaatggcacc 55  Q
    |||||||||||||||||||||||||||||||||||    
T  21166171 ggaaagaactctcctttcccaaattaaatggcacc 21166137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 56
Target Start/End: Original strand, 28684231 - 28684281
Alignment:
Q  6 aactttcccatggtaggaaagaactctcctttcccaaattaaatggcacct 56  Q
    |||||||| ||||||||||| || ||||||||||||||||||||| |||||    
T  28684231 aactttcctatggtaggaaaaaagtctcctttcccaaattaaatgtcacct 28684281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 29650655 - 29650689
Alignment:
Q  21 ggaaagaactctcctttcccaaattaaatggcacc 55  Q
    |||||||||||||||||||||||||||||||||||    
T  29650655 ggaaagaactctcctttcccaaattaaatggcacc 29650689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 55
Target Start/End: Complemental strand, 31836255 - 31836221
Alignment:
Q  21 ggaaagaactctcctttcccaaattaaatggcacc 55  Q
    |||||||||||||||||||||||||||||||||||    
T  31836255 ggaaagaactctcctttcccaaattaaatggcacc 31836221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 55
Target Start/End: Complemental strand, 45235767 - 45235733
Alignment:
Q  21 ggaaagaactctcctttcccaaattaaatggcacc 55  Q
    |||||||||||||||||||||||||||||||||||    
T  45235767 ggaaagaactctcctttcccaaattaaatggcacc 45235733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 6 - 55
Target Start/End: Complemental strand, 37275137 - 37275088
Alignment:
Q  6 aactttcccatggtaggaaagaactctcctttcccaaattaaatggcacc 55  Q
    ||||||| |||||| |||||||| ||||||||||||||||||| ||||||    
T  37275137 aactttctcatggtgggaaagaagtctcctttcccaaattaaacggcacc 37275088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 39522427 - 39522374
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatggcacct 56  Q
    |||||||||||||||||   |||||||| ||||||||||||||||||| |||||    
T  39522427 atcaactttcccatggtgaaaaagaactatcctttcccaaattaaatgacacct 39522374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 25371545 - 25371593
Alignment:
Q  7 actttcccatggtaggaaagaactctcctttcccaaattaaatggcacc 55  Q
    |||||| |||||| |||||||| ||||||||||||||||||||| ||||    
T  25371545 actttctcatggtgggaaagaagtctcctttcccaaattaaatgtcacc 25371593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 47376904 - 47376852
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatggcacc 55  Q
    ||||||||||||||| | ||||| ||||| |||||||||||||||||| ||||    
T  47376904 atcaactttcccatgatgggaaacaactcccctttcccaaattaaatgccacc 47376852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 7 - 50
Target Start/End: Complemental strand, 3847934 - 3847891
Alignment:
Q  7 actttcccatggtaggaaagaactctcctttcccaaattaaatg 50  Q
    ||||||||||||| ||||| || |||||||||||||||||||||    
T  3847934 actttcccatggtgggaaaaaagtctcctttcccaaattaaatg 3847891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 54
Target Start/End: Complemental strand, 29650467 - 29650416
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatggcac 54  Q
    ||||||||||||| | | | ||||||||||| ||||||||||||||||||||    
T  29650467 atcaactttcccaagatggaaaagaactctcatttcccaaattaaatggcac 29650416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 55
Target Start/End: Complemental strand, 26611090 - 26611056
Alignment:
Q  21 ggaaagaactctcctttcccaaattaaatggcacc 55  Q
    ||||||||||||| |||||||||||||||||||||    
T  26611090 ggaaagaactctcatttcccaaattaaatggcacc 26611056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 30478357 - 30478308
Alignment:
Q  7 actttcccatggtaggaaagaactctcctttcccaaattaaatggcacct 56  Q
    ||||||||||| | |||||||| | | |||||||||||||||||||||||    
T  30478357 actttcccatgatgggaaagaagtttgctttcccaaattaaatggcacct 30478308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 55
Target Start/End: Complemental strand, 30808670 - 30808621
Alignment:
Q  6 aactttcccatggtaggaaagaactctcctttcccaaattaaatggcacc 55  Q
    |||||||||||||| ||||| |||||||||||||||  ||||||| ||||    
T  30808670 aactttcccatggtgggaaacaactctcctttcccattttaaatgccacc 30808621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 42544536 - 42544487
Alignment:
Q  7 actttcccatggtaggaaagaactctcctttcccaaattaaatggcacct 56  Q
    ||||| ||||||| ||||| || ||| |||||||||||||||||||||||    
T  42544536 acttttccatggtgggaaaaaagtcttctttcccaaattaaatggcacct 42544487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 47199395 - 47199444
Alignment:
Q  7 actttcccatggtaggaaagaactctcctttcccaaattaaatggcacct 56  Q
    ||||||| ||||| |||||||| |||| |||||||||||||||| |||||    
T  47199395 actttcctatggtgggaaagaagtctcttttcccaaattaaatgccacct 47199444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 48013365 - 48013316
Alignment:
Q  7 actttcccatggtaggaaagaactctcctttcccaaattaaatggcacct 56  Q
    ||||||||||| | |||||||| | | |||||||||||||||||||||||    
T  48013365 actttcccatgatgggaaagaagtttgctttcccaaattaaatggcacct 48013316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 31835200 - 31835148
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatggcacc 55  Q
    ||||||||||| ||||| |||||||||| | ||||  ||||||||||||||||    
T  31835200 atcaactttcctatggtgggaaagaactatactttttcaaattaaatggcacc 31835148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 36750433 - 36750486
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatggcacct 56  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  36750433 atcaactttcccatggtgggaaagaactctcctttcccaaattaaatggcacct 36750486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 19132615 - 19132563
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatggcacc 55  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  19132615 atcaactttcccatagtaggaaagaactctcctttcccaaattaaatggcacc 19132563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 3 - 54
Target Start/End: Complemental strand, 38922795 - 38922744
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatggcac 54  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  38922795 atcaactttcccatggtaggaaataactctcctttcccaaattaaatggcac 38922744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 19132808 - 19132860
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatggcacc 55  Q
    ||||||||||||||||| |||||||||| ||||||||||||||||||||||||    
T  19132808 atcaactttcccatggtgggaaagaactttcctttcccaaattaaatggcacc 19132860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 3 - 58
Target Start/End: Original strand, 32490191 - 32490246
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatggcacctca 58  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||    
T  32490191 atcaacttttccatggtgggaaagaactctcctttcccaaattaaatggtacctca 32490246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 32489998 - 32489946
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatggcacc 55  Q
    ||||||||||||||||| | |||||| ||||||||||||||||||||||||||    
T  32489998 atcaactttcccatggtggaaaagaattctcctttcccaaattaaatggcacc 32489946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 38923661 - 38923713
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatggcacc 55  Q
    ||||||||| ||||||| ||||||||||||| |||||||||||||||||||||    
T  38923661 atcaacttttccatggtgggaaagaactctcatttcccaaattaaatggcacc 38923713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 45242983 - 45243035
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatggcacc 55  Q
    ||||||||||||||||| | |||||||||| ||||||||||||||||||||||    
T  45242983 atcaactttcccatggtggaaaagaactcttctttcccaaattaaatggcacc 45243035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 55
Target Start/End: Original strand, 31556217 - 31556264
Alignment:
Q  8 ctttcccatggtaggaaagaactctcctttcccaaattaaatggcacc 55  Q
    |||||||||| | |||||||||||||||||||||||||||||||||||    
T  31556217 ctttcccatgatgggaaagaactctcctttcccaaattaaatggcacc 31556264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 44687159 - 44687212
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatggcacct 56  Q
    ||||||||| ||||||| | |||||| |||||||||||||||||||||||||||    
T  44687159 atcaacttttccatggtggaaaagaattctcctttcccaaattaaatggcacct 44687212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 55
Target Start/End: Original strand, 49757181 - 49757230
Alignment:
Q  6 aactttcccatggtaggaaagaactctcctttcccaaattaaatggcacc 55  Q
    |||||||||||||||||||| || ||||||||||||||||||| ||||||    
T  49757181 aactttcccatggtaggaaaaaagtctcctttcccaaattaaacggcacc 49757230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 50
Target Start/End: Complemental strand, 36750097 - 36750050
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatg 50  Q
    ||||||||| ||||||| | ||||||||||||||||||||||||||||    
T  36750097 atcaacttttccatggtggaaaagaactctcctttcccaaattaaatg 36750050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 54
Target Start/End: Complemental strand, 45242118 - 45242067
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatggcac 54  Q
    ||||||||||||||| | | ||||||||||| ||||||||||||||||||||    
T  45242118 atcaactttcccatgatggaaaagaactctcatttcccaaattaaatggcac 45242067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 55
Target Start/End: Complemental strand, 52491926 - 52491891
Alignment:
Q  20 aggaaagaactctcctttcccaaattaaatggcacc 55  Q
    ||||||||||||||||||||||||||||||||||||    
T  52491926 aggaaagaactctcctttcccaaattaaatggcacc 52491891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 55
Target Start/End: Complemental strand, 17227014 - 17226968
Alignment:
Q  9 tttcccatggtaggaaagaactctcctttcccaaattaaatggcacc 55  Q
    ||||||||||| |||||||| ||||||||||||||||||||| ||||    
T  17227014 tttcccatggtgggaaagaaatctcctttcccaaattaaatgccacc 17226968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 55
Target Start/End: Complemental strand, 38923472 - 38923438
Alignment:
Q  21 ggaaagaactctcctttcccaaattaaatggcacc 55  Q
    |||||||||||||||||||||||||||||||||||    
T  38923472 ggaaagaactctcctttcccaaattaaatggcacc 38923438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 45242307 - 45242341
Alignment:
Q  21 ggaaagaactctcctttcccaaattaaatggcacc 55  Q
    |||||||||||||||||||||||||||||||||||    
T  45242307 ggaaagaactctcctttcccaaattaaatggcacc 45242341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 41755551 - 41755498
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatggcacct 56  Q
    ||||| |||| |||||| ||||| |||||||||||||||||||||||| |||||    
T  41755551 atcaattttctcatggtgggaaaaaactctcctttcccaaattaaatgacacct 41755498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 41756428 - 41756481
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatggcacct 56  Q
    ||||||||||||||| | ||||||||||||||||||| || ||||||| |||||    
T  41756428 atcaactttcccatgatgggaaagaactctcctttcctaacttaaatgacacct 41756481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 52492277 - 52492329
Alignment:
Q  5 caactttcccatggtaggaaagaactctcctttcccaaattaaatggcacctc 57  Q
    ||||||| ||||||| | ||||||||||| |||||||||||||||| ||||||    
T  52492277 caacttttccatggtggaaaagaactctcatttcccaaattaaatgacacctc 52492329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 8 - 55
Target Start/End: Complemental strand, 21811926 - 21811879
Alignment:
Q  8 ctttcccatggtaggaaagaactctcctttcccaaattaaatggcacc 55  Q
    |||||||||||||||||| || |||| |||||||||||||| ||||||    
T  21811926 ctttcccatggtaggaaaaaagtctcatttcccaaattaaacggcacc 21811879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 8 - 55
Target Start/End: Complemental strand, 31556235 - 31556188
Alignment:
Q  8 ctttcccatggtaggaaagaactctcctttcccaaattaaatggcacc 55  Q
    |||||||||  | ||||||||||||||||| |||||||||||||||||    
T  31556235 ctttcccatcatgggaaagaactctccttttccaaattaaatggcacc 31556188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 6 - 57
Target Start/End: Original strand, 37105076 - 37105127
Alignment:
Q  6 aactttcccatggtaggaaagaactctcctttcccaaattaaatggcacctc 57  Q
    |||||||||||||| ||||| || |||| |||||||||||||| ||||||||    
T  37105076 aactttcccatggtgggaaaaaagtctcgtttcccaaattaaacggcacctc 37105127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 3971233 - 3971267
Alignment:
Q  21 ggaaagaactctcctttcccaaattaaatggcacc 55  Q
    |||||||||||||||||||||||||||||| ||||    
T  3971233 ggaaagaactctcctttcccaaattaaatgacacc 3971267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 55
Target Start/End: Complemental strand, 3998648 - 3998614
Alignment:
Q  21 ggaaagaactctcctttcccaaattaaatggcacc 55  Q
    |||||||||||||||||||||||||||||| ||||    
T  3998648 ggaaagaactctcctttcccaaattaaatgacacc 3998614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 56
Target Start/End: Complemental strand, 14667345 - 14667296
Alignment:
Q  6 aactttcccatggtaggaaagaactctcctttcccaaattaaatggcacct 56  Q
    |||||||||||||| ||||| || ||||||||||||||||||| |||||||    
T  14667345 aactttcccatggtgggaaaaaa-tctcctttcccaaattaaacggcacct 14667296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 218
Target Start/End: Complemental strand, 16723893 - 16723863
Alignment:
Q  188 aatttgtgcgaaccaattcacaaaagtacca 218  Q
    |||||||||||||||||||||||||||||||    
T  16723893 aatttgtgcgaaccaattcacaaaagtacca 16723863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 41755729 - 41755763
Alignment:
Q  21 ggaaagaactctcctttcccaaattaaatggcacc 55  Q
    |||||| ||||||||||||||||||||||||||||    
T  41755729 ggaaagtactctcctttcccaaattaaatggcacc 41755763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 56
Target Start/End: Complemental strand, 49756324 - 49756274
Alignment:
Q  6 aactttcccatggtaggaaagaactctcctttcccaaattaaatggcacct 56  Q
    |||||||||||||| ||||| |||  |||||| ||||||||||||||||||    
T  49756324 aactttcccatggtgggaaataacattccttttccaaattaaatggcacct 49756274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 3971898 - 3971951
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatggcacct 56  Q
    ||||||||||||||  | |||||||||| || ||||| ||||||||||||||||    
T  3971898 atcaactttcccatcatgggaaagaactttcatttcctaaattaaatggcacct 3971951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 3997980 - 3997927
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatggcacct 56  Q
    ||||||||||||||  | |||||||||| || ||||| ||||||||||||||||    
T  3997980 atcaactttcccatcatgggaaagaactttcatttcctaaattaaatggcacct 3997927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 55
Target Start/End: Original strand, 17227955 - 17227996
Alignment:
Q  14 catggtaggaaagaactctcctttcccaaattaaatggcacc 55  Q
    |||||| |||||||| ||||||||||||||||||||| ||||    
T  17227955 catggtgggaaagaagtctcctttcccaaattaaatgccacc 17227996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 43638078 - 43638127
Alignment:
Q  7 actttcccatggtaggaaagaactctcctttcccaaattaaatggcacct 56  Q
    ||||||||||| | |||||||| | | |||||||||||||||||||||||    
T  43638078 actttcccatgatgggaaagaagtttactttcccaaattaaatggcacct 43638127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 44686306 - 44686254
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatggcacct 56  Q
    |||||||||| |||||| | ||| ||||||||||| ||||||||||||||||||    
T  44686306 atcaactttctcatggt-gaaaaaaactctccttttccaaattaaatggcacct 44686254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 39901894 - 39901846
Alignment:
Q  7 actttcccatggtaggaaagaactctcctttcccaaattaaatggcacc 55  Q
    ||||||||||||| ||||||||||||| |||||||  ||||| ||||||    
T  39901894 actttcccatggtgggaaagaactctcatttcccaggttaaacggcacc 39901846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 54
Target Start/End: Original strand, 42145277 - 42145325
Alignment:
Q  6 aactttcccatggtaggaaagaactctcctttcccaaattaaatggcac 54  Q
    |||||||| ||||| | ||| || |||||||||||||||||||||||||    
T  42145277 aactttcctatggtggaaaaaaagtctcctttcccaaattaaatggcac 42145325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 51974489 - 51974436
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatggcacct 56  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  51974489 atcaactttcccatggtgggaaagaactctcctttcccaaattaaatggcacct 51974436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 16270259 - 16270207
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatggcacc 55  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  16270259 atcaactttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 16270207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 23440861 - 23440913
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatggcacc 55  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  23440861 atcaactttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 23440913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 43737974 - 43738027
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatggcacct 56  Q
    ||||||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  43737974 atcaactttcccatgatgggaaagaactctcctttcccaaattaaatggcacct 43738027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 48972441 - 48972494
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatggcacct 56  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  48972441 atcaacttttccatggtgggaaagaactctcctttcccaaattaaatggcacct 48972494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 9948883 - 9948935
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatggcacc 55  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  9948883 atcaactttcccatggtgggaaagaactctcctttcctaaattaaatggcacc 9948935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 38931243 - 38931293
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatggca 53  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  38931243 atcaactttcccatggtagaaaagaactcttctttcccaaattaaatggca 38931293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 6 - 55
Target Start/End: Complemental strand, 193899 - 193850
Alignment:
Q  6 aactttcccatggtaggaaagaactctcctttcccaaattaaatggcacc 55  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||||    
T  193899 aactttctcatggtgggaaagaactctcctttcccaaattaaatggcacc 193850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 23440669 - 23440617
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatggcacc 55  Q
    ||||||||| |||| || |||||||||||||||||||||||||||||||||||    
T  23440669 atcaacttttccatagttggaaagaactctcctttcccaaattaaatggcacc 23440617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 43737781 - 43737729
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatggcacc 55  Q
    ||||||||||||||||| ||||| |||||| ||||||||||||||||||||||    
T  43737781 atcaactttcccatggtgggaaataactctactttcccaaattaaatggcacc 43737729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 51987875 - 51987826
Alignment:
Q  7 actttcccatggtaggaaagaactctcctttcccaaattaaatggcacct 56  Q
    ||||||||||||| |||||||| ||||||||||||||||||||| |||||    
T  51987875 actttcccatggtgggaaagaagtctcctttcccaaattaaatgccacct 51987826  T

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Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 9948047 - 9947995
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatggcacc 55  Q
    ||||||||| ||||||| |||||||||| | ||||||||||||||||||||||    
T  9948047 atcaacttttccatggtgggaaagaacttttctttcccaaattaaatggcacc 9947995  T

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Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 16271144 - 16271196
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatggcacc 55  Q
    ||||||||||||||| |  |||||||||||||||||| |||||||||||||||    
T  16271144 atcaactttcccatgatgagaaagaactctcctttcctaaattaaatggcacc 16271196  T

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Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 48971757 - 48971705
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatggcacc 55  Q
    |||||||||| ||| || |||||||||||||||||||||||||||||| ||||    
T  48971757 atcaactttctcattgtgggaaagaactctcctttcccaaattaaatgacacc 48971705  T

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Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 50827087 - 50827138
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatggcacc 55  Q
    ||||||||||||||||| ||||| |||||||||||| ||||||||||||||||    
T  50827087 atcaactttcccatggtgggaaa-aactctcctttctcaaattaaatggcacc 50827138  T

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Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 51975223 - 51975275
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatggcacc 55  Q
    |||||||||||||| ||   |||||||||||||||||||||||||||||||||    
T  51975223 atcaactttcccatagtgaaaaagaactctcctttcccaaattaaatggcacc 51975275  T

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Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 56
Target Start/End: Complemental strand, 1012596 - 1012546
Alignment:
Q  6 aactttcccatggtaggaaagaactctcctttcccaaattaaatggcacct 56  Q
    |||||||||||||| ||||| || ||||||||||||||||||| |||||||    
T  1012596 aactttcccatggtgggaaaaaaatctcctttcccaaattaaacggcacct 1012546  T

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Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 55
Target Start/End: Complemental strand, 16270935 - 16270901
Alignment:
Q  21 ggaaagaactctcctttcccaaattaaatggcacc 55  Q
    |||||||||||||||||||||||||||||||||||    
T  16270935 ggaaagaactctcctttcccaaattaaatggcacc 16270901  T

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Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 38930574 - 38930608
Alignment:
Q  21 ggaaagaactctcctttcccaaattaaatggcacc 55  Q
    |||||||||||||||||||||||||||||||||||    
T  38930574 ggaaagaactctcctttcccaaattaaatggcacc 38930608  T

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Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 35616775 - 35616824
Alignment:
Q  7 actttcccatggtaggaaagaactctcctttcccaaattaaatggcacct 56  Q
    ||||||||||||| |||||||| ||||||||||||| ||||||| |||||    
T  35616775 actttcccatggtgggaaagaagtctcctttcccaagttaaatgccacct 35616824  T

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Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 8560887 - 8560839
Alignment:
Q  7 actttcccatggtaggaaagaactctcctttcccaaattaaatggcacc 55  Q
    ||||||||||| | |||||||| ||||||||||||||||||||| ||||    
T  8560887 actttcccatgatgggaaagaagtctcctttcccaaattaaatgtcacc 8560839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 38930364 - 38930312
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatggcacc 55  Q
    |||||||||||||||||   |||||||| ||||||||||||||||||| ||||    
T  38930364 atcaactttcccatggtgaaaaagaactttcctttcccaaattaaatgacacc 38930312  T

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Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 51988464 - 51988512
Alignment:
Q  7 actttcccatggtaggaaagaactctcctttcccaaattaaatggcacc 55  Q
    ||||||||||||| | |||||| ||||||||||||||||||||| ||||    
T  51988464 actttcccatggtggaaaagaagtctcctttcccaaattaaatgccacc 51988512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 41
Target Start/End: Complemental strand, 6076026 - 6075988
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttccca 41  Q
    |||||||||| |||||||| |||||||||||||||||||    
T  6076026 atcaactttctcatggtagaaaagaactctcctttccca 6075988  T

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Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 55
Target Start/End: Complemental strand, 51975013 - 51974979
Alignment:
Q  21 ggaaagaactctcctttcccaaattaaatggcacc 55  Q
    ||||||||| |||||||||||||||||||||||||    
T  51975013 ggaaagaaccctcctttcccaaattaaatggcacc 51974979  T

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Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 224
Target Start/End: Original strand, 10682851 - 10682888
Alignment:
Q  187 aaatttgtgcgaaccaattcacaaaagtaccatgaatc 224  Q
    |||||| ||| |||||||||||||||||||||||||||    
T  10682851 aaatttatgcaaaccaattcacaaaagtaccatgaatc 10682888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 194701 - 194749
Alignment:
Q  7 actttcccatggtaggaaagaactctcctttcccaaattaaatggcacc 55  Q
    ||||||||||| | |||||||| | | ||||||||||||||||||||||    
T  194701 actttcccatgatgggaaagaagtttgctttcccaaattaaatggcacc 194749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 37874112 - 37874064
Alignment:
Q  7 actttcccatggtaggaaagaactctcctttcccaaattaaatggcacc 55  Q
    ||||||||||||| |||||||| |||| |||||||| ||||||| ||||    
T  37874112 actttcccatggtgggaaagaagtctcatttcccaagttaaatgtcacc 37874064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 57
Target Start/End: Complemental strand, 48869815 - 48869767
Alignment:
Q  9 tttcccatggtaggaaagaactctcctttcccaaattaaatggcacctc 57  Q
    ||||||||||| | |||||| ||||||||||||| ||||||| ||||||    
T  48869815 tttcccatggtggaaaagaagtctcctttcccaagttaaatgtcacctc 48869767  T

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Target: scaffold0041 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 27273 - 27221
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatggcacc 55  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  27273 atcaactttcccatgatgggaaagaactctcctttcccaaattaaatggcacc 27221  T

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Target: scaffold0041; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 27571 - 27623
Alignment:
Q  3 atcaactttcccatggtaggaaagaactctcctttcccaaattaaatggcacc 55  Q
    ||||||||||||||||| ||||| ||||||||||| |||||||||||||||||    
T  27571 atcaactttcccatggtgggaaaaaactctccttttccaaattaaatggcacc 27623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1037 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1037
Description:

Target: scaffold1037; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 2899 - 2948
Alignment:
Q  7 actttcccatggtaggaaagaactctcctttcccaaattaaatggcacct 56  Q
    ||||||||||||||| |||||| | |||||||||| ||||||| ||||||    
T  2899 actttcccatggtagaaaagaagtatcctttcccagattaaatagcacct 2948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1031 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1031
Description:

Target: scaffold1031; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 3018 - 3067
Alignment:
Q  7 actttcccatggtaggaaagaactctcctttcccaaattaaatggcacct 56  Q
    ||||||||||||||| |||||| | |||||||||| ||||||| ||||||    
T  3018 actttcccatggtagaaaagaagtatcctttcccagattaaatagcacct 3067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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