View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8643_low_13 (Length: 295)
Name: NF8643_low_13
Description: NF8643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8643_low_13 |
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| [»] scaffold0187 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 19 - 286
Target Start/End: Complemental strand, 37915024 - 37914757
Alignment:
| Q |
19 |
gcaacatacttgctgatgatcagtatttgttcaacttataaattatagcagaagcaattgacattaatttaataaatgataatctagagaaataaacaat |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||| |
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| T |
37915024 |
gcaacatacttgctgatgatcagtatttgttcaacttataaattatagtagaagcaattgatattaatttaataaatgataatttagagaaataaacaat |
37914925 |
T |
|
| Q |
119 |
gaaatatatacatatggtacataatcaatagtattatgcattctaggcagccggatcaacttgatagcgttcggattctgaaatgcgattcttgtatttg |
218 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
37914924 |
gaaatatatacatatggtacgtaatcaatagtattatgcattctaggcagccggatcaacttgatagcgttcggattctgatatgcgattcttgtatttg |
37914825 |
T |
|
| Q |
219 |
cggatgaaatcttcagctctgctgttaatattgggttcagcaacaccccagttacctttgtcttcatc |
286 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
37914824 |
cggatgaaatcttcagctctgctgttaatattgggctcagcaacaccccagttacctttgtcttcatc |
37914757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 115 - 286
Target Start/End: Complemental strand, 37884028 - 37883860
Alignment:
| Q |
115 |
caatgaaatatatacatatggtacataatcaatagtattatgcattctaggcagccggatcaacttgatagcgttcggattctgaaatgcgattcttgta |
214 |
Q |
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||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||| |
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| T |
37884028 |
caatgaaatatatacatatggtacataatagata---ttatgcattctaggcagccggatcaacttgatagcattcggattctgatatgtgattcttgta |
37883932 |
T |
|
| Q |
215 |
tttgcggatgaaatcttcagctctgctgttaatattgggttcagcaacaccccagttacctttgtcttcatc |
286 |
Q |
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||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
37883931 |
tttgcggatgaaatctttagctctcctgttaatattgggctcagcaacaccccagttacctttgtcttcatc |
37883860 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 152 - 286
Target Start/End: Complemental strand, 37862141 - 37862007
Alignment:
| Q |
152 |
ttatgcattctaggcagccggatcaacttgatagcgttcggattctgaaatgcgattcttgtatttgcggatgaaatcttcagctctgctgttaatattg |
251 |
Q |
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||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |
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| T |
37862141 |
ttatgcattctcagcagacggatcaacttgataacgttcggattctgaaatgcgattcttgtatttgcggatgaaatcttcagctctcctgttaatgtta |
37862042 |
T |
|
| Q |
252 |
ggttcagcaacaccccagttacctttgtcttcatc |
286 |
Q |
| |
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|| || ||||||||||||||||||||||| ||||| |
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| T |
37862041 |
ggctctgcaacaccccagttacctttgtcatcatc |
37862007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 165 - 286
Target Start/End: Complemental strand, 37870311 - 37870190
Alignment:
| Q |
165 |
gcagccggatcaacttgatagcgttcggattctgaaatgcgattcttgtatttgcggatgaaatcttcagctctgctgttaatattgggttcagcaacac |
264 |
Q |
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||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| || || |||||||||| |
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| T |
37870311 |
gcagctggatcaacttgatagcgctcggattctgaaactcgattcttgtatttgcggatgaaatcttcagctctcctgttaatgttaggctcagcaacac |
37870212 |
T |
|
| Q |
265 |
cccagttacctttgtcttcatc |
286 |
Q |
| |
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||||||||||| |||||||||| |
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| T |
37870211 |
cccagttacctctgtcttcatc |
37870190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 74 - 143
Target Start/End: Original strand, 8919795 - 8919864
Alignment:
| Q |
74 |
aattgacattaatttaataaatgataatctagagaaataaacaatgaaatatatacatatggtacataat |
143 |
Q |
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|||||| ||||| | ||||||||||||| |||||||||||||||||||||| ||||||||| |||||||| |
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| T |
8919795 |
aattgatattaactcaataaatgataatatagagaaataaacaatgaaatacatacatatgatacataat |
8919864 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 88 - 134
Target Start/End: Complemental strand, 37870398 - 37870352
Alignment:
| Q |
88 |
taataaatgataatctagagaaataaacaatgaaatatatacatatg |
134 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||| ||| |
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|
| T |
37870398 |
taataaatgataatctagagaaataaacaaggaaatatatacacatg |
37870352 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187 (Bit Score: 114; Significance: 8e-58; HSPs: 3)
Name: scaffold0187
Description:
Target: scaffold0187; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 88 - 286
Target Start/End: Complemental strand, 13965 - 13769
Alignment:
| Q |
88 |
taataaatgataatctagagaaataaacaatgaaatatatacatatggtacataatcaatag-tattatgcattctaggcagccggatcaacttgatagc |
186 |
Q |
| |
|
|||||||||||||||| |||||||||| | |||||||||||||||||||| || |||| |||||||||| |||| |||||||||||||||||||| |
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| T |
13965 |
taataaatgataatctctagaaataaacgacgaaatatatacatatggtacgtat---atagatattatgcatactagagagccggatcaacttgatagc |
13869 |
T |
|
| Q |
187 |
gttcggattctgaaatgcgattcttgtatttgcggatgaaatcttcagctctgctgttaatattgggttcagcaacaccccagttacctttgtcttcatc |
286 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| || || |||||||||||||||||||||||||||||||| |
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|
| T |
13868 |
tatcggattctgaaatgcgattcttgcatttgcggatgaaatcttcagctctcctgttaatgttaggctcagcaacaccccagttacctttgtcttcatc |
13769 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 88 - 286
Target Start/End: Complemental strand, 24293 - 24097
Alignment:
| Q |
88 |
taataaatgataatctagagaaataaacaatgaaatatatacatatggtacataatcaatag-tattatgcattctaggcagccggatcaacttgatagc |
186 |
Q |
| |
|
|||||||||||||||| |||||||||| | |||||||||||||||||||| || |||| |||||||||| |||| |||||||||||||||||||| |
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|
| T |
24293 |
taataaatgataatctctagaaataaacgacgaaatatatacatatggtacgtat---atagatattatgcatactagagagccggatcaacttgatagc |
24197 |
T |
|
| Q |
187 |
gttcggattctgaaatgcgattcttgtatttgcggatgaaatcttcagctctgctgttaatattgggttcagcaacaccccagttacctttgtcttcatc |
286 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| || || |||||||||||||||||||||||||||||||| |
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| T |
24196 |
tatcggattctgaaatgcgattcttgcatttgcggatgaaatcttcagctctcctgttaatgttaggctcagcaacaccccagttacctttgtcttcatc |
24097 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #3
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 151 - 286
Target Start/End: Original strand, 3881 - 4016
Alignment:
| Q |
151 |
attatgcattctaggcagccggatcaacttgatagcgttcggattctgaaatgcgattcttgtatttgcggatgaaatcttcagctctgctgttaatatt |
250 |
Q |
| |
|
||||||||||||||| || |||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||| |
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| T |
3881 |
attatgcattctaggacgctggatcaacttgataacgttcggattctgagatgcgattcttgtatctgcggatgaaatcttcagctctcctgttaatatt |
3980 |
T |
|
| Q |
251 |
gggttcagcaacaccccagttacctttgtcttcatc |
286 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||| |
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|
| T |
3981 |
gggctcagcaacaccccagttacctttgtcttcatc |
4016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 35538258 - 35538134
Alignment:
| Q |
19 |
gcaacatacttgctgatgatcagtatttgttcaacttataaa-ttatagcagaagcaattgacattaatttaataaatgataatctagagaaataaacaa |
117 |
Q |
| |
|
|||||||||| ||| ||||| |||||||||||||||||| || || ||| | || ||||||| ||||| |||||| |||||||| |||| |||||||||| |
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|
| T |
35538258 |
gcaacatactcgct-atgattagtatttgttcaacttatgaacttgtagaaaaaacaattgatattaacttaatagatgataatatagaaaaataaacaa |
35538160 |
T |
|
| Q |
118 |
tgaaatatatacatatggtacataat |
143 |
Q |
| |
|
||||||| |||||||||||||||||| |
|
|
| T |
35538159 |
tgaaatacatacatatggtacataat |
35538134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 74 - 143
Target Start/End: Original strand, 11775636 - 11775705
Alignment:
| Q |
74 |
aattgacattaatttaataaatgataatctagagaaataaacaatgaaatatatacatatggtacataat |
143 |
Q |
| |
|
|||||| | ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11775636 |
aattgatagtaatttaataaatgataatttggagaaataaacaatgaaatatatacatatggtacataat |
11775705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 74 - 143
Target Start/End: Original strand, 3091121 - 3091192
Alignment:
| Q |
74 |
aattgacattaatttaataaatgataatctagagaaataaacaatgaa--atatatacatatggtacataat |
143 |
Q |
| |
|
|||||| ||||| ||||||||| |||||||||||||||||||||| || ||||||| |||||||||||||| |
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|
| T |
3091121 |
aattgatattaacttaataaataataatctagagaaataaacaataaaatatatatatatatggtacataat |
3091192 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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