View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8643_low_14 (Length: 292)

Name: NF8643_low_14
Description: NF8643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8643_low_14
NF8643_low_14
[»] chr1 (1 HSPs)
chr1 (1-292)||(26038501-26038791)


Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 26038501 - 26038791
Alignment:
Q  1 tcattgtacttaaaggagacatcacagaatttcaggtcccccgtaacatggtccaaatcaacagcatctggtttctcaaccacctattattcagaaagnn 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  26038501 tcattgtacttaaaggagacatcacagaatttcaggtcccccgtaacatggtccaaatcaacagcatctggtttctcaaccacctattattcagaaagaa 26038600  T
Q  101 nnnnnngatctattattgaagttcatctagcnnnnnnnnatnnnnnnnnggggggaaagagcaaattattgttgattaaagtgacactaatgagaaaacc 200  Q
          |||||||||||||||||||||||||        ||         ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26038601 aaaaaagatctattattgaagttcatctagcttttttt-ataaaaaaaaagggggaaagagcaaattattgttgattaaagtgacactaatgagaaaacc 26038699  T
Q  201 gttctcgaggagatttgaacctcatccattgagattgcatggttaaaaaatttactgagctgacaactcatggacatcagttcatctagtta 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  26038700 gttctcgaggagatttgaacctcatccattgagattgcatggttaaaacttttactgagctgacaactcatggacatcagttcatctagtta 26038791  T

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