View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8643_low_17 (Length: 268)
Name: NF8643_low_17
Description: NF8643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8643_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 18 - 262
Target Start/End: Original strand, 7809706 - 7809950
Alignment:
| Q |
18 |
gatatataaatgggaaagaaaattcattttgttctccccattaccacatggctccatgtattatttcaattatttgattattatcgctatggagcttttt |
117 |
Q |
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| T |
7809706 |
gatatataaatgggaaagaaaattcattttgttctccccattaccacatggctccatgtattgtttcaattatttgattattatcgctatggagcttttt |
7809805 |
T |
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| Q |
118 |
ctacacatgtatttatgaattatatgtacatacttaatttaggtgtcattttctccttcnnnnnnnggtgtcatttttaaaattaagtcaaaacatttga |
217 |
Q |
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| T |
7809806 |
ctacacatgtatttatgaattatatgtacatacttaatttaggtgtcattttttccttcaaaaaaaggtgtcatttttaaaattaagtcaaaacatttga |
7809905 |
T |
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| Q |
218 |
gctgagtatattaagaggaaaaataattaagaggtcaacaccaaa |
262 |
Q |
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||||||||||| |||||||||||||||||||||||||||| |||| |
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| T |
7809906 |
gctgagtatatgaagaggaaaaataattaagaggtcaacatcaaa |
7809950 |
T |
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