View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8643_low_18 (Length: 252)
Name: NF8643_low_18
Description: NF8643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8643_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 25 - 236
Target Start/End: Original strand, 52167748 - 52167959
Alignment:
| Q |
25 |
actattttgggtcttgcagatttttgaagggataaattggtcttcaagttatatttaaatgagatagtaagatatgtatctataagacgaaacaggcaac |
124 |
Q |
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| T |
52167748 |
actattttgggtcttgcagatttttgaagggataaattggtcttcacgttatatttaaatgagatagtaagatatgtatctataagacgaaacaggcaac |
52167847 |
T |
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| Q |
125 |
tagccatgacaatcataccacatgatttacatatttaatgcggttcaggccacaaatccataatgatttaacagaatcataatatatttaatacgctctt |
224 |
Q |
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| T |
52167848 |
tagccatgacaatcataccacataatttacatatttaacgcggttcaggccacaaatccataatgatttaacagaatcataatatatttaatacgctctt |
52167947 |
T |
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| Q |
225 |
tattcttgtttt |
236 |
Q |
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|||||||||||| |
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| T |
52167948 |
tattcttgtttt |
52167959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 108 - 236
Target Start/End: Original strand, 19327593 - 19327719
Alignment:
| Q |
108 |
aagacgaaacaggcaactagccatgacaatcataccacatgatttacatatttaatgcggttcaggccacaaatccataatgatttaacagaatcataat |
207 |
Q |
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||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |
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| T |
19327593 |
aagacgaaacatgcaactagccatgacagtcatagcacatgatttacatatttaatgtcgttcaggccacaaatccataatgatttaacataatcata-- |
19327690 |
T |
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| Q |
208 |
atatttaatacgctctttattcttgtttt |
236 |
Q |
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|||||||||||| | |||||| ||||||| |
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| T |
19327691 |
atatttaatacggtatttattgttgtttt |
19327719 |
T |
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