View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8643_low_19 (Length: 250)
Name: NF8643_low_19
Description: NF8643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8643_low_19 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 8 - 130
Target Start/End: Complemental strand, 10980011 - 10979889
Alignment:
| Q |
8 |
tgagaagaagaagggttgtctggatcgacgtgggtgctggttttgagagggtactgtgttaaatctggttttgggagaagagagggaaaggaaaaacagt |
107 |
Q |
| |
|
||||| |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
10980011 |
tgagaggaagaagggttgtctggatcgatgtgggtactggttttgagagggtactgtgttaaatctggttttgggagaagagagggaaaggaaaaatagt |
10979912 |
T |
|
| Q |
108 |
tcagcgcgaaaggatgaaaacat |
130 |
Q |
| |
|
||||||| ||||||||||||||| |
|
|
| T |
10979911 |
tcagcgccaaaggatgaaaacat |
10979889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 168 - 250
Target Start/End: Complemental strand, 10979848 - 10979766
Alignment:
| Q |
168 |
atttgacaatggctaagatagcatttagtcataaagtgctaacaaataatatatccttatattagcgttcctgtaaaagcgat |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10979848 |
atttgacaatggctaagatagcatttagtcataaagtgctaacaaataatatatccttatattagcgttcctgtaaaagcgat |
10979766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 101; Significance: 4e-50; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 8 - 136
Target Start/End: Original strand, 18761329 - 18761457
Alignment:
| Q |
8 |
tgagaagaagaagggttgtctggatcgacgtgggtgctggttttgagagggtactgtgttaaatctggttttgggagaagagagggaaaggaaaaacagt |
107 |
Q |
| |
|
||||| |||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
18761329 |
tgagaggaagaagggttgtctggatcgatgtgggtactagttttgagagggtactgtgttaaatctggttttgggagaagagagggaaaggaaaaatagt |
18761428 |
T |
|
| Q |
108 |
tcagcgcgaaaggatgaaaacatgtgcgg |
136 |
Q |
| |
|
||||||| ||||||||||||||| ||||| |
|
|
| T |
18761429 |
tcagcgccaaaggatgaaaacatttgcgg |
18761457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 168 - 250
Target Start/End: Original strand, 18761493 - 18761575
Alignment:
| Q |
168 |
atttgacaatggctaagatagcatttagtcataaagtgctaacaaataatatatccttatattagcgttcctgtaaaagcgat |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18761493 |
atttgacaatggctaagatagcatttagtcataaagtgctaacaaataatatatccttatattagcgttcctgtaaaagcgat |
18761575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University