View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8643_low_2 (Length: 566)
Name: NF8643_low_2
Description: NF8643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8643_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 480; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 19 - 561
Target Start/End: Complemental strand, 48801500 - 48800953
Alignment:
| Q |
19 |
aaatctatatctatattatttacattttagaatttaccaagacttgaacatagtactggtannnnnnnnn---atttcaagtaaaattccataaagtaac |
115 |
Q |
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| T |
48801500 |
aaatctatatctatattatttacattttagaatttaccaagacttgaacatagtactagtattttttttttttatttcaagtaaaattccataaagtaac |
48801401 |
T |
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| Q |
116 |
acattttggtcggtagaaataattaaactatagatgctttgtagatgatattatctaatcaaatttgttataattgccatcttgacatgttgagagtact |
215 |
Q |
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| T |
48801400 |
acattttggtcggtagaaataattaaactatagatgctttgtagatgatatcatctaatcaaatttgttataattgccatcttgacatgttgagagtact |
48801301 |
T |
|
| Q |
216 |
acgttggatagtaatatgatctgaacgatgattatagttgaaggcaaccgtcattccatgtagtagtttttgaggttgaacaaagaattataattctgat |
315 |
Q |
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| T |
48801300 |
acgttggatagtaatatgatctgaacgatgattatagttgaaggcaaccgtcattccatgtagtagtttttgaggttgaacaaagaattataattctgat |
48801201 |
T |
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| Q |
316 |
atggtaaacaaagtatagcctattgcgccatccacatatatctagtagtttatacactccagatgtctagtctctggcttgaggaatgtgttgagagtcc |
415 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48801200 |
atggtaaacaaagtatagcctattgagccatccacatatatctagtagtttatacactccagatgtctagtctctggcttgaggaatgtgttgagagtcc |
48801101 |
T |
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| Q |
416 |
ttcaagccggttttttgaatattttgagtccggtccaatttttaaaac--tagttcgcctatttctctttctaacttttgggtattcaaaccaagtgtat |
513 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48801100 |
ttcaagccggttttttgaatattttgagtccggtccaatttttaaaacattagttggcctatttctctttctaacttttgggtattcaaaccaagtgtat |
48801001 |
T |
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| Q |
514 |
tagacaaaaatatctcatgctttatttgattgtctgcttcttctcact |
561 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48801000 |
tagacaaaaatatctcatgctttatttgattgtctgcttcttctcact |
48800953 |
T |
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