View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8643_low_24 (Length: 237)
Name: NF8643_low_24
Description: NF8643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8643_low_24 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 40 - 237
Target Start/End: Complemental strand, 34349351 - 34349154
Alignment:
| Q |
40 |
tcaatttttattaggtttgaattttaggcacatatttttctggtctgaaaacataaattagaggttattcgtatctccttcctttttggtttactagtat |
139 |
Q |
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| T |
34349351 |
tcaatttttattaggtttgaattttaggcacatatttttctggtctgaaaacataaattaaaggttattcgtatctccttcctttttggtttactagtat |
34349252 |
T |
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| Q |
140 |
atccccactattctttgatcatagtgagtatccatctcatacttcaacttaaatgtacatcaagaaaattgcttgctgcacacactacgggacactct |
237 |
Q |
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| T |
34349251 |
atccccactattctttgatcatagtgagtatccatctcatacttcaacttacatgtacattaagaaaattgctagcagcacacactatgtgacactct |
34349154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 147 - 188
Target Start/End: Original strand, 34606644 - 34606685
Alignment:
| Q |
147 |
ctattctttgatcatagtgagtatccatctcatacttcaact |
188 |
Q |
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| T |
34606644 |
ctattctttgctcatagtgagtatccatctcatacttcaact |
34606685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 14355022 - 14354970
Alignment:
| Q |
1 |
agacaaaatactcgattttcagaaataactaccaaatactcaatttttattag |
53 |
Q |
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| T |
14355022 |
agacaaaatactcgattttcagaaataactaccaaatactcaatttttattag |
14354970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 14354942 - 14354905
Alignment:
| Q |
16 |
ttttcagaaataactaccaaatactcaatttttattag |
53 |
Q |
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| T |
14354942 |
ttttcagaaataactaccaaatactcaatttttattag |
14354905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 8173341 - 8173304
Alignment:
| Q |
16 |
ttttcagaaataactaccaaatactcaatttttattag |
53 |
Q |
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|||| ||||||||||||||||||||||||||||||||| |
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| T |
8173341 |
tttttagaaataactaccaaatactcaatttttattag |
8173304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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