View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8643_low_3 (Length: 521)
Name: NF8643_low_3
Description: NF8643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8643_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 370; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 14 - 399
Target Start/End: Original strand, 36674781 - 36675166
Alignment:
| Q |
14 |
aatggacgttggcggctctatcatagtggctagtagatgatcagtatcttaaacacagtgccaactgccatcaaatgaacttaatttctcaatcatatgc |
113 |
Q |
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| T |
36674781 |
aatggacgttggcggctctatcatagtggctagtagatgatcagtatcttaaacacagtgccaactgccatcaaatgaacttaatttctcaatcatatgc |
36674880 |
T |
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| Q |
114 |
tcaatcaaacttttctctatttataggacgaacaccaccgtacacactccctcacaattagtcacaacacatgcaatatacatgatctacctaatacaat |
213 |
Q |
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| T |
36674881 |
tcaatcaaacttttctctatttataggacgaataccaccgtacatactccctcacaattagtcacaacacatgcaatatacatgatctacctaatacaat |
36674980 |
T |
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| Q |
214 |
taaatcagtgcatttataagtttatactatattctcaagaatcgagagtgagtgttatagactcaaatttgtaatttcagttgcaaaatctaggaaaaat |
313 |
Q |
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| T |
36674981 |
taaattagtgcatttataagtttatactatattctcaagaatcgagagtgagtgttatagactcaaatttgtaatttcagttgcaaaatctaggaaaaat |
36675080 |
T |
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| Q |
314 |
gagtactgcagaaattgctcgaacagtagtgggtatcataggtgggtcatactaatttgctttttaagctttcattaaaaacatat |
399 |
Q |
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| T |
36675081 |
gagtactgcagaaattgctcgaacagcagtgggtatcataggtgggtcatactaatttgctttttaagctttcattaaaaacatat |
36675166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 468 - 510
Target Start/End: Original strand, 36675230 - 36675272
Alignment:
| Q |
468 |
ccttcttgacttcaggaaatgtcatagccggctgcatgttctt |
510 |
Q |
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| T |
36675230 |
ccttcttgacttcaggaaatgtcatcgccggctgcatgttctt |
36675272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 468 - 510
Target Start/End: Original strand, 36685312 - 36685354
Alignment:
| Q |
468 |
ccttcttgacttcaggaaatgtcatagccggctgcatgttctt |
510 |
Q |
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| T |
36685312 |
ccttcttgacttcaggaaatgtcatcgccggctgcatgttctt |
36685354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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