View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8643_low_8 (Length: 386)
Name: NF8643_low_8
Description: NF8643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8643_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 18 - 372
Target Start/End: Complemental strand, 36056211 - 36055857
Alignment:
| Q |
18 |
aacataaacactgcaaacccagaaacaggtttaaaaaaccaactatgaacatcccaaagcaaatccaccaacaacccatcaacaaaaattgtttgattac |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36056211 |
aacataaacactgcaaacccagaaacaggtttaaaaaaccaactatgaacatcccaaagcaaatccaccaacaacccatcaacaaaaattgtttgattac |
36056112 |
T |
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| Q |
118 |
ccctaaaattccacttcaacctcttcacacaaattacaatcttcttatcaatacaaacattcagaacaggtgatttaaacccttcattttcaccactgca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36056111 |
ccctaaaattccacttcaacctcttcacacaaattacaatcttcttatcaatacaaacattcagaacaggtgatttaaacccttcattttcaccactgca |
36056012 |
T |
|
| Q |
218 |
tttaatcaaaatatcatgcataattccactctcacaaaacttagccttagttgtgtaataaagtgtgttacctgaaaaatattcacttcttgaaaaaagt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36056011 |
tttaatcaaaatatcatgcataattccactctcacaaaacttagccttagttgtgtaataaagtgtgttacctgaaaaatattcacttcttgaaaaaagt |
36055912 |
T |
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| Q |
318 |
gaaactttatccataagggtccnnnnnnnaaacttctttggtaaattttcttcat |
372 |
Q |
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| T |
36055911 |
gaaactttatccataagggtcctttttttaagcttctttggtaaattttcttcat |
36055857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 48 - 169
Target Start/End: Original strand, 20085407 - 20085528
Alignment:
| Q |
48 |
ttaaaaaaccaactatgaacatcccaaagcaaatccaccaacaacccatcaacaaaaattgtttgattacccctaaaattccacttcaacctcttcacac |
147 |
Q |
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| T |
20085407 |
ttaaagaaccaatcatgaacatcccaaagcaaatcaaccaataaaccatcaacaaaaatggtttgattccctctaaaattccattgcaatctcttcacac |
20085506 |
T |
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| Q |
148 |
aaattacaatcttcttatcaat |
169 |
Q |
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| T |
20085507 |
gaatcacattcttcttatcaat |
20085528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 80 - 166
Target Start/End: Complemental strand, 42021594 - 42021508
Alignment:
| Q |
80 |
atccaccaacaacccatcaacaaaaattgtttgattacccctaaaattccacttcaacctcttcacacaaattacaatcttcttatc |
166 |
Q |
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|||||| | ||| ||||| ||||||||||||||||| || | ||||||||||||||| |||||||| || |||||||||||||| |
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| T |
42021594 |
atccactaccaaaccatccacaaaaattgtttgattgccacgaaaattccacttcaatctcttcaccttaaacacaatcttcttatc |
42021508 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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