View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8644_high_1 (Length: 291)
Name: NF8644_high_1
Description: NF8644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8644_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 16 - 280
Target Start/End: Complemental strand, 4124692 - 4124429
Alignment:
| Q |
16 |
agcaacaatccttgtaattgtcacgaattgacttcttaattggttcttttgtttttatttatgcaaaaatagatatccagaagctatacaaaacatcttc |
115 |
Q |
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| T |
4124692 |
agcaacaatccttgtaattgtcacgaattgacttcttaattggttcttttgtttttatttatgcaaaaatagatatccagaagctatacaaaacatcttc |
4124593 |
T |
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| Q |
116 |
cacaatccacatgaatcatgatagtttgaataggaatatgttacaaattacaaactcatcaaactcaaactaagttctagtattcctcaaaaaatcatca |
215 |
Q |
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| T |
4124592 |
cacaatccacatgaatcatgatagtttgaataggaatatgttacaaattacaaactcatcaaac-caaactaagttctagtattcctcaaaaaatcatca |
4124494 |
T |
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| Q |
216 |
ttgtctaaacaattttgttacacattaatggcttttctacgtcataatacaaatgacttattcat |
280 |
Q |
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| T |
4124493 |
ttgtctaaacaattttgttacacattaatggcttttctacgtcataatacaaatgacttattcat |
4124429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 132 - 280
Target Start/End: Complemental strand, 4135122 - 4134974
Alignment:
| Q |
132 |
catgatagtttgaataggaatatgttacaaattacaaactcatcaaactcaaactaagttctagtattcctcaaaaaatcatcattgtct-aaacaattt |
230 |
Q |
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| T |
4135122 |
catgatagtttgattaggaacatgttacaaattacaaactcat-aaagcctatctaagttctagtattcctcaaaaaa-catcatcatctaaaacagttt |
4135025 |
T |
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| Q |
231 |
tgttacacattaatggc-ttttctacgtcataatacaaatgacttattcat |
280 |
Q |
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| T |
4135024 |
tgttacacatttatggctttttctaagtcataatataaatgacttattcat |
4134974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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