View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8644_low_4 (Length: 242)

Name: NF8644_low_4
Description: NF8644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8644_low_4
NF8644_low_4
[»] chr1 (3 HSPs)
chr1 (10-225)||(15885735-15885950)
chr1 (13-225)||(12609920-12610132)
chr1 (10-225)||(12637013-12637225)
[»] scaffold0059 (1 HSPs)
scaffold0059 (10-225)||(62165-62380)
[»] chr3 (14 HSPs)
chr3 (13-221)||(22971966-22972174)
chr3 (13-210)||(22946419-22946616)
chr3 (1-225)||(23036173-23036397)
chr3 (10-223)||(23145932-23146145)
chr3 (1-225)||(23039044-23039268)
chr3 (10-225)||(23024284-23024499)
chr3 (1-223)||(23148761-23148983)
chr3 (79-182)||(23032780-23032883)
chr3 (10-182)||(23140058-23140230)
chr3 (58-181)||(23017122-23017245)
chr3 (70-199)||(22941373-22941502)
chr3 (100-199)||(22831937-22832036)
chr3 (13-199)||(22986292-22986478)
chr3 (100-183)||(22916686-22916769)
[»] chr6 (2 HSPs)
chr6 (13-223)||(21779828-21780038)
chr6 (87-131)||(12438393-12438437)
[»] scaffold0554 (1 HSPs)
scaffold0554 (10-225)||(6527-6742)
[»] chr5 (2 HSPs)
chr5 (61-137)||(41465802-41465878)
chr5 (87-131)||(41654614-41654658)
[»] chr8 (2 HSPs)
chr8 (100-199)||(5594029-5594128)
chr8 (13-181)||(23610232-23610400)
[»] chr4 (1 HSPs)
chr4 (105-167)||(55955001-55955063)
[»] chr2 (1 HSPs)
chr2 (10-46)||(2433634-2433670)


Alignment Details
Target: chr1 (Bit Score: 152; Significance: 1e-80; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 10 - 225
Target Start/End: Complemental strand, 15885950 - 15885735
Alignment:
Q  10 aaaggaatgtactcaaaattagtccctttgtaatcaaaagagctaccgatgaatctctccggataaaacctctcaggttcagtccaatactttgaatctc 109  Q
    ||||||||||||||||||||| ||||||| || |||| ||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||| |||||    
T  15885950 aaaggaatgtactcaaaattattccctttatagtcaatagagctaccaatgaatctctctggataaaacctctctggttcagtccaatactttggatctc 15885851  T
Q  110 ttccaattgcccatgcattcactatcaccttacttttgattggtatatgatatccatcaatctcacatgcttgtgtacattctcttggaactaaaagagg 209  Q
    ||||||| ||||||||||| ||||||||||| |||||| ||||||||||||| |||||||||||||||||||||  |||||||||||||| |||||||||    
T  15885850 ttccaatcgcccatgcattgactatcaccttgcttttggttggtatatgataaccatcaatctcacatgcttgttcacattctcttggaagtaaaagagg 15885751  T
Q  210 agctggagggtgtaac 225  Q
    ||||||||||||||||    
T  15885750 agctggagggtgtaac 15885735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 13 - 225
Target Start/End: Original strand, 12609920 - 12610132
Alignment:
Q  13 ggaatgtactcaaaattagtccctttgtaatcaaaagagctaccgatgaatctctccggataaaacctctcaggttcagtccaatactttgaatctcttc 112  Q
    |||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||| ||||||||    
T  12609920 ggaatgtactcaaaattattccctttgtagtcaatagagctaccgatgaatctctccggataaaacttctctggttcagtccagtactttggatctcttc 12610019  T
Q  113 caattgcccatgcattcactatcaccttacttttgattggtatatgatatccatcaatctcacatgcttgtgtacattctcttggaactaaaagaggagc 212  Q
    |||| ||||||||||| ||||||||||| ||||||||||||||| |||| |||||||||||||||||||||  |||||||||||||| |||||||||| |    
T  12610020 caatcgcccatgcattgactatcaccttgcttttgattggtatacgatacccatcaatctcacatgcttgtccacattctcttggaagtaaaagaggacc 12610119  T
Q  213 tggagggtgtaac 225  Q
    |||||| ||||||    
T  12610120 tggaggatgtaac 12610132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 10 - 225
Target Start/End: Original strand, 12637013 - 12637225
Alignment:
Q  10 aaaggaatgtactcaaaattagtccctttgtaatcaaaagagctaccgatgaatctctccggataaaacctctcaggttcagtccaatactttgaatctc 109  Q
    ||||||||||||||||||||| | |||||||| |||| ||||||||| ||||||||||| |||| ||||||||| ||||||||||| ||||||| |||||    
T  12637013 aaaggaatgtactcaaaattatttcctttgtagtcaatagagctaccaatgaatctctctggatgaaacctctctggttcagtccagtactttggatctc 12637112  T
Q  110 ttccaattgcccatgcattcactatcaccttacttttgattggtatatgatatccatcaatctcacatgcttgtgtacattctcttggaactaaaagagg 209  Q
    | ||||||| ||||||||| ||||||||||||||||||  |||||||||||| || ||||| ||||||||||||  |||||||||   || |||||||||    
T  12637113 taccaattgtccatgcatttactatcaccttacttttggctggtatatgatacccttcaatttcacatgcttgtccacattctct---aagtaaaagagg 12637209  T
Q  210 agctggagggtgtaac 225  Q
    || |||||||||||||    
T  12637210 agttggagggtgtaac 12637225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 10 - 225
Target Start/End: Original strand, 62165 - 62380
Alignment:
Q  10 aaaggaatgtactcaaaattagtccctttgtaatcaaaagagctaccgatgaatctctccggataaaacctctcaggttcagtccaatactttgaatctc 109  Q
    |||||||||||||| |||||| |||| ||||| |||| ||| ||||| ||||||||||| |||||||||||||| ||||| ||||| ||| ||| |||||    
T  62165 aaaggaatgtactcgaaattattcccgttgtagtcaatagaactaccaatgaatctctctggataaaacctctctggttccgtccagtaccttggatctc 62264  T
Q  110 ttccaattgcccatgcattcactatcaccttacttttgattggtatatgatatccatcaatctcacatgcttgtgtacattctcttggaactaaaagagg 209  Q
    |||| |||||||||||||| ||||||| |||  |||| |||||||||||||| ||||||||||||||||||| | ||||||||||||||| ||||||||     
T  62265 ttccgattgcccatgcattaactatcagctttgttttcattggtatatgatacccatcaatctcacatgcttctctacattctcttggaagtaaaagagc 62364  T
Q  210 agctggagggtgtaac 225  Q
    | |||| |||||||||    
T  62365 acctggggggtgtaac 62380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 3e-38; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 13 - 221
Target Start/End: Original strand, 22971966 - 22972174
Alignment:
Q  13 ggaatgtactcaaaattagtccctttgtaatcaaaagagctaccgatgaatctctccggataaaacctctcaggttcagtccaatactttgaatctcttc 112  Q
    ||||||||||||||||| || |||||| |||||| ||| ||| | || ||||| || ||||||||| | || || ||||||||||| |||| ||| ||||    
T  22971966 ggaatgtactcaaaatttgttcctttgaaatcaagagaactatcaataaatctttcaggataaaacttatctggatcagtccaatattttggatcccttc 22972065  T
Q  113 caattgcccatgcattcactatcaccttacttttgattggtatatgatatccatcaatctcacatgcttgtgtacattctcttggaactaaaagaggagc 212  Q
    |||||||||| ||||| | ||||||| |||||||||||||||| ||||| |||||||||||||| ||||||  |||  | ||||| |||||||||||| |    
T  22972066 caattgcccaagcattgattatcaccctacttttgattggtatgtgataaccatcaatctcacaagcttgtccacacacccttggtactaaaagaggacc 22972165  T
Q  213 tggagggtg 221  Q
     ||||||||    
T  22972166 aggagggtg 22972174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 13 - 210
Target Start/End: Original strand, 22946419 - 22946616
Alignment:
Q  13 ggaatgtactcaaaattagtccctttgtaatcaaaagagctaccgatgaatctctccggataaaacctctcaggttcagtccaatactttgaatctcttc 112  Q
    ||||||||||||||||| || |||||| |||||| ||| ||| | || ||||| || ||||||||| | || || ||||||||||| |||| ||| ||||    
T  22946419 ggaatgtactcaaaatttgttcctttgaaatcaacagaactatcaataaatctttcaggataaaacttatctggatcagtccaatattttggatcccttc 22946518  T
Q  113 caattgcccatgcattcactatcaccttacttttgattggtatatgatatccatcaatctcacatgcttgtgtacattctcttggaactaaaagagga 210  Q
    |||||||||| ||||| | ||||||| |||| ||||||||||| ||||| |||||||||||||||||||||| |||  | || |||| ||||||||||    
T  22946519 caattgcccaagcattgattatcaccctactattgattggtatgtgataaccatcaatctcacatgcttgtgcacacaccctaggaattaaaagagga 22946616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 23036173 - 23036397
Alignment:
Q  1 ccggcgccgaaaggaatgtactcaaaattagtccctttgtaatcaaaagagctaccgatgaatctctccggataaaacctctcaggttcagtccaatact 100  Q
    ||||| || ||||||||||||||||| ||| |||||||||| |||| || |||  ||||||||||||| |||||||| ||||| ||||||||||| || |    
T  23036173 ccggcaccaaaaggaatgtactcaaagttactccctttgtagtcaatagcgctgtcgatgaatctctcgggataaaatctctctggttcagtccagtaat 23036272  T
Q  101 ttgaatctcttccaattgcccatgcattcactatcaccttacttttgattggtatatgatatccatcaatctcacatgcttgtgtacattctcttggaac 200  Q
    ||| ||||||| |||||||||| ||||| | | | |||||||| || || ||||| ||||| ||||  ||| ||||||||||   ||| |||||||| |     
T  23036273 ttggatctcttgcaattgcccaagcatttattgttaccttactcttaataggtatgtgataaccatttatcacacatgcttgaacacactctcttggtag 23036372  T
Q  201 taaaagaggagctggagggtgtaac 225  Q
     |||||||| | |||||||||||||    
T  23036373 caaaagaggtgttggagggtgtaac 23036397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 10 - 223
Target Start/End: Original strand, 23145932 - 23146145
Alignment:
Q  10 aaaggaatgtactcaaaattagtccctttgtaatcaaaagagctaccgatgaatctctccggataaaacctctcaggttcagtccaatactttgaatctc 109  Q
    ||||||||||||||||| ||| ||||||| || |||| |  |||  ||||||||||||| |||||||||||||| ||||||||||| || |||| |||||    
T  23145932 aaaggaatgtactcaaagttactccctttatagtcaatatcgctgtcgatgaatctctctggataaaacctctctggttcagtccagtagtttggatctc 23146031  T
Q  110 ttccaattgcccatgcattcactatcaccttacttttgattggtatatgatatccatcaatctcacatgcttgtgtacattctcttggaactaaaagagg 209  Q
    || ||| |||||| ||||| |||| ||||||| | || || ||||| ||||| ||||  || |||||| ||||  |||||||||| || |  ||||||||    
T  23146032 ttgcaactgcccaagcattgactaacaccttagtcttaatcggtatgtgataaccatttatatcacattcttgactacattctctcggtaacaaaagagg 23146131  T
Q  210 agctggagggtgta 223  Q
     |||||||||||||    
T  23146132 tgctggagggtgta 23146145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 23039044 - 23039268
Alignment:
Q  1 ccggcgccgaaaggaatgtactcaaaattagtccctttgtaatcaaaagagctaccgatgaatctctccggataaaacctctcaggttcagtccaatact 100  Q
    ||||| || ||||||||||||||| ||||| | ||||| || ||||  | |||  | | ||||||||| |||||||| ||||| || |||||||| || |    
T  23039044 ccggcaccaaaaggaatgtactcataattacttcctttatagtcaatggcgctgtcaaggaatctctctggataaaatctctccggctcagtccagtaat 23039143  T
Q  101 ttgaatctcttccaattgcccatgcattcactatcaccttacttttgattggtatatgatatccatcaatctcacatgcttgtgtacattctcttggaac 200  Q
    ||| ||||||| |||||||||| ||||| |||||||||||||| || || ||||| ||||| ||||  |||||||||| |||   |||||||||||| |     
T  23039144 ttggatctcttgcaattgcccaagcattgactatcaccttactcttaataggtatgtgataaccatttatctcacatgtttgacgacattctcttggcag 23039243  T
Q  201 taaaagaggagctggagggtgtaac 225  Q
     |||||||| | |||||||||||||    
T  23039244 caaaagaggtgttggagggtgtaac 23039268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 10 - 225
Target Start/End: Original strand, 23024284 - 23024499
Alignment:
Q  10 aaaggaatgtactcaaaattagtccctttgtaatcaaaagagctaccgatgaatctctccggataaaacctctcaggttcagtccaatactttgaatctc 109  Q
    |||||||| |||||||| ||| ||||||| || |||| |   ||| ||||||||||||| |||||||||||||| ||||| ||||| || |||| |||||    
T  23024284 aaaggaatatactcaaagttactccctttatagtcaatatcactatcgatgaatctctctggataaaacctctctggttcggtccagtaatttggatctc 23024383  T
Q  110 ttccaattgcccatgcattcactatcaccttacttttgattggtatatgatatccatcaatctcacatgcttgtgtacattctcttggaactaaaagagg 209  Q
    || |||||||||| ||||| |||||||||||| | ||  |||| || | ||| || || |||| ||||| ||| | ||||||||| || | |||||| ||    
T  23024384 ttgcaattgcccaagcattgactatcaccttagtcttagttggaatgtcataaccgtctatcttacatgattgagcacattctctcggtattaaaagtgg 23024483  T
Q  210 agctggagggtgtaac 225  Q
     || ||||||||||||    
T  23024484 tgccggagggtgtaac 23024499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 23148761 - 23148983
Alignment:
Q  1 ccggcgccgaaaggaatgtactcaaaattagtccctttgtaatcaaaagagctaccgatgaatctctccggataaaacctctcaggttcagtccaatact 100  Q
    ||||| || |||||||||||||| || ||| ||||||| || |||| |  |||  | ||||||||||| |||||||||||||| ||||||||||| || |    
T  23148761 ccggcaccaaaaggaatgtactcgaagttactccctttatagtcaatatcgctttcaatgaatctctctggataaaacctctctggttcagtccagtagt 23148860  T
Q  101 ttgaatctcttccaattgcccatgcattcactatcaccttacttttgattggtatatgatatccatcaatctcacatgcttgtgtacattctcttggaac 200  Q
    ||||||||||| |||||||||| ||||| | |||||| ||| | || || || || ||||| ||||  || ||||| |||||  |||||||||| || |     
T  23148861 ttgaatctcttgcaattgcccaagcattgattatcactttagtcttaatcggaatgtgataaccatttatatcacacgcttgactacattctctcggtaa 23148960  T
Q  201 taaaagaggagctggagggtgta 223  Q
     |||||||| || ||||||||||    
T  23148961 caaaagaggtgccggagggtgta 23148983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 79 - 182
Target Start/End: Original strand, 23032780 - 23032883
Alignment:
Q  79 ctctcaggttcagtccaatactttgaatctcttccaattgcccatgcattcactatcaccttacttttgattggtatatgatatccatcaatctcacatg 178  Q
    ||||| ||||||||||| || |||| ||||||| |||||||||| ||||| ||||||||||||||||| |||||||| ||||| ||||  ||||||||||    
T  23032780 ctctctggttcagtccagtagtttggatctcttgcaattgcccaagcattgactatcaccttacttttaattggtatgtgataaccatttatctcacatg 23032879  T
Q  179 cttg 182  Q
    ||||    
T  23032880 cttg 23032883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 182
Target Start/End: Original strand, 23140058 - 23140230
Alignment:
Q  10 aaaggaatgtactcaaaattagtccctttgtaatcaaaagagctaccgatgaatctctccggataaaacctctcaggttcagtccaatactttgaatctc 109  Q
    ||||||||||||||||||| | ||||||| || |||| || | | || ||||||||||| ||||||||  |||| ||||||||||| || |||| |||||    
T  23140058 aaaggaatgtactcaaaatcactccctttatagtcaatagtgtttcccatgaatctctctggataaaatttctctggttcagtccagtagtttggatctc 23140157  T
Q  110 ttccaattgcccatgcattcactatcaccttacttttgattggtatatgatatccatcaatctcacatgcttg 182  Q
    |  | |||||||||||||| || | ||||||| | || | |||||| ||||| ||||  ||||||||||||||    
T  23140158 tcgcgattgcccatgcattgacgaccaccttagtcttaaatggtatgtgataaccatgtatctcacatgcttg 23140230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 58 - 181
Target Start/End: Original strand, 23017122 - 23017245
Alignment:
Q  58 atgaatctctccggataaaacctctcaggttcagtccaatactttgaatctcttccaattgcccatgcattcactatcaccttacttttgattggtatat 157  Q
    ||||||||||| ||||||||| |||| ||||||||||| || |||| ||||||| | |||||||| ||||| | |||||||||| | || | |||||| |    
T  23017122 atgaatctctctggataaaacttctctggttcagtccagtagtttggatctcttgcgattgcccaagcattaattatcaccttagtcttaactggtatgt 23017221  T
Q  158 gatatccatcaatctcacatgctt 181  Q
    |||| ||||  |||||||||||||    
T  23017222 gataaccatgtatctcacatgctt 23017245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 70 - 199
Target Start/End: Complemental strand, 22941502 - 22941373
Alignment:
Q  70 ggataaaacctctcaggttcagtccaatactttgaatctcttccaattgcccatgcattcactatcaccttacttttgattggtatatgatatccatcaa 169  Q
    |||||||| ||||| || |||  |||||  |||| |||||||||||| ||||| |||||||||||||| || ||||| |  ||||||| ||| ||||  |    
T  22941502 ggataaaatctctctgggtcatcccaatgatttggatctcttccaatggcccaagcattcactatcactttgcttttaaaaggtatatcatacccattta 22941403  T
Q  170 tctcacatgcttgtgtacattctcttggaa 199  Q
    | ||||||||||||  ||||||||||||||    
T  22941402 tttcacatgcttgtccacattctcttggaa 22941373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 100 - 199
Target Start/End: Original strand, 22831937 - 22832036
Alignment:
Q  100 tttgaatctcttccaattgcccatgcattcactatcaccttacttttgattggtatatgatatccatcaatctcacatgcttgtgtacattctcttggaa 199  Q
    |||| |||||||||||| ||||| |||||||||||||| || ||||| |  ||||||| ||| ||||  ||||||||||||| |  ||||||||||||||    
T  22831937 tttggatctcttccaatagcccaagcattcactatcactttgcttttaaaaggtatatcatacccatttatctcacatgcttttccacattctcttggaa 22832036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 13 - 199
Target Start/End: Original strand, 22986292 - 22986478
Alignment:
Q  13 ggaatgtactcaaaattagtccctttgtaatcaaaagagctaccgatgaatctctccggataaaacctctcaggttcagtccaatactttgaatctcttc 112  Q
    |||||||||||||||||||| |||||| |||||| ||| ||| | || || ||||| ||||||||| | || || ||| ||||||| || | ||| | ||    
T  22986292 ggaatgtactcaaaattagttcctttgaaatcaatagaactatcaataaacctctcaggataaaacttatcggggtcattccaatatttaggatcccgtc 22986391  T
Q  113 caattgcccatgcattcactatcaccttacttttgattggtatatgatatccatcaatctcacatgcttgtgtacattctcttggaa 199  Q
    |||| ||||| ||||| || |  ||  ||||||| |  ||||| | ||| |||| ||||||||| ||||||  ||| ||||||||||    
T  22986392 caatggcccaagcattaacgaggactctactttttacaggtatgtaataaccattaatctcacaagcttgtccacactctcttggaa 22986478  T

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Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 183
Target Start/End: Complemental strand, 22916769 - 22916686
Alignment:
Q  100 tttgaatctcttccaattgcccatgcattcactatcaccttacttttgattggtatatgatatccatcaatctcacatgcttgt 183  Q
    |||| |||||||||||| ||||| |||||||||||||| || ||||| | |||||||  ||| ||||  || ||||||||||||    
T  22916769 tttggatctcttccaatggcccaagcattcactatcactttgcttttaaatggtataccatacccatttatttcacatgcttgt 22916686  T

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Target: chr6 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 13 - 223
Target Start/End: Original strand, 21779828 - 21780038
Alignment:
Q  13 ggaatgtactcaaaattagtccctttgtaatcaaaagagctaccgatgaatctctccggataaaacctctcaggttcagtccaatactttgaatctcttc 112  Q
    |||||||||||||||||| |||||||  | |||| |  |||| ||||||||||||| ||||||||| |||| ||||||||||| || |||| |||||||     
T  21779828 ggaatgtactcaaaattactccctttaaagtcaatatcgctatcgatgaatctctctggataaaacatctctggttcagtccagtagtttggatctcttg 21779927  T
Q  113 caattgcccatgcattcactatcaccttacttttgattggtatatgatatccatcaatctcacatgcttgtgtacattctcttggaactaaaagaggagc 212  Q
    |||||||||| ||||| | |||||||||| | || || || || || || ||||  || |||||||||||  |||||||||| || |  |||||||| ||    
T  21779928 caattgcccaagcattgattatcaccttagtcttaatcggaatgtggtaaccatttatatcacatgcttgactacattctctcggtaacaaaagaggtgc 21780027  T
Q  213 tggagggtgta 223  Q
    |||||||||||    
T  21780028 tggagggtgta 21780038  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 131
Target Start/End: Original strand, 12438393 - 12438437
Alignment:
Q  87 ttcagtccaatactttgaatctcttccaattgcccatgcattcac 131  Q
    |||| ||||||||||||  ||||||||||||||||||||||||||    
T  12438393 ttcattccaatactttgggtctcttccaattgcccatgcattcac 12438437  T

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Target: scaffold0554 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0554
Description:

Target: scaffold0554; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 10 - 225
Target Start/End: Complemental strand, 6742 - 6527
Alignment:
Q  10 aaaggaatgtactcaaaattagtccctttgtaatcaaaagagctaccgatgaatctctccggataaaacctctcaggttcagtccaatactttgaatctc 109  Q
    |||||||||||||||||||||  |||||| || |||| || |||  |  |||||||||| |||||||||||||| |||||||||||  | |||| |||||    
T  6742 aaaggaatgtactcaaaattaccccctttatagtcaatagtgctgtcagtgaatctctctggataaaacctctctggttcagtccagaagtttggatctc 6643  T
Q  110 ttccaattgcccatgcattcactatcaccttacttttgattggtatatgatatccatcaatctcacatgcttgtgtacattctcttggaactaaaagagg 209  Q
    || |||||||||| ||||| | ||||||||||||  | |  ||||| | ||| ||||  |||||||||||||    |||||||||||| |  ||||||||    
T  6642 ttgcaattgcccaagcattgattatcaccttactcctaaacggtatgttataaccatttatctcacatgctttaccacattctcttggtagcaaaagagg 6543  T
Q  210 agctggagggtgtaac 225  Q
     |||||||||||||||    
T  6542 tgctggagggtgtaac 6527  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 61 - 137
Target Start/End: Complemental strand, 41465878 - 41465802
Alignment:
Q  61 aatctctccggataaaacctctcaggttcagtccaatactttgaatctcttccaattgcccatgcattcactatcac 137  Q
    ||||||||||||  |||| | || |||||| |||||||||||| |||||||||||| ||||||||||| ||||||||    
T  41465878 aatctctccggaataaacttttccggttcactccaatactttggatctcttccaatcgcccatgcatttactatcac 41465802  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 131
Target Start/End: Complemental strand, 41654658 - 41654614
Alignment:
Q  87 ttcagtccaatactttgaatctcttccaattgcccatgcattcac 131  Q
    |||| |||||||||||   ||||||||||||||||||||||||||    
T  41654658 ttcaatccaatacttttggtctcttccaattgcccatgcattcac 41654614  T

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Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 100 - 199
Target Start/End: Complemental strand, 5594128 - 5594029
Alignment:
Q  100 tttgaatctcttccaattgcccatgcattcactatcaccttacttttgattggtatatgatatccatcaatctcacatgcttgtgtacattctcttggaa 199  Q
    |||| |||||||||||| ||||| |||||||||||||| || ||||| |  ||||||| ||| ||||  ||||||||||||| |  ||||||||||||||    
T  5594128 tttggatctcttccaatagcccaagcattcactatcactttgcttttaaaaggtatatcatacccatttatctcacatgcttttccacattctcttggaa 5594029  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 181
Target Start/End: Original strand, 23610232 - 23610400
Alignment:
Q  13 ggaatgtactcaaaattagtccctttgtaatcaaaagagctaccgatgaatctctccggataaaacctctcaggttcagtccaatactttgaatctcttc 112  Q
    |||||| ||||||||||||| |||  | |||||| ||||||| | || || || || ||||||||| | || || ||| ||||||| || | ||| ||||    
T  23610232 ggaatgaactcaaaattagttcctgagaaatcaatagagctatcaataaacctttcaggataaaacttatctgggtcattccaatatttaggatcccttc 23610331  T
Q  113 caattgcccatgcattcactatcaccttacttttgattggtatatgatatccatcaatctcacatgctt 181  Q
    | |||||||| ||||| | ||  ||  ||||||| |  ||||||||||| |||| ||||||||| ||||    
T  23610332 ctattgcccaagcatttattaggactctactttttacaggtatatgatagccattaatctcacaagctt 23610400  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 167
Target Start/End: Original strand, 55955001 - 55955063
Alignment:
Q  105 atctcttccaattgcccatgcattcactatcaccttacttttgattggtatatgatatccatc 167  Q
    |||||||||||||||||||||||| ||||||||  || | || |||||||| | |||||||||    
T  55955001 atctcttccaattgcccatgcatttactatcacgctagtctttattggtatttcatatccatc 55955063  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 46
Target Start/End: Complemental strand, 2433670 - 2433634
Alignment:
Q  10 aaaggaatgtactcaaaattagtccctttgtaatcaa 46  Q
    ||||| |||||||||||||||| ||||||||||||||    
T  2433670 aaaggtatgtactcaaaattagaccctttgtaatcaa 2433634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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