View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8645_1 (Length: 687)
Name: NF8645_1
Description: NF8645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8645_1 |
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Alignment Details
Target: chr8 (Bit Score: 475; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 1 - 556
Target Start/End: Original strand, 8269731 - 8270285
Alignment:
| Q |
1 |
tctttgttgtaggcttgggtgtataagcacttcagcgtgtataagcagcaaggatgcgtggggtggatatcgggataatcagcatccacgcgccatattt |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
8269731 |
tctttgttgtaggcttgggtttataagcacttcagcgtgtataagcagcaaggatgcgtggggtggatatcgggataatcagcatccacgcgccatgttt |
8269830 |
T |
|
| Q |
101 |
tttgcaccacggatgggtttgtctacaccaaacaagtacagaggttacctggatgcgctagatctaaaaaagtaatagtaataannnnnnnatnnnnnnn |
200 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| || |
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| T |
8269831 |
tttgcaccacggatgagtttgtctacaccaaacaagtacagaggttacctggatgcgctggatctaaaaaagtaacagtaataatttttttataaaaaaa |
8269930 |
T |
|
| Q |
201 |
nntcttaatgttaaaggtcttttctattcaatgtttgttcatgtggtcttacaaaaaattagagatcttgctagggaggttgaagcaaaggctttacaag |
300 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8269931 |
c-tcgtaatgttaaaggtcttttctattcaatgtttgttcatgtggtcttacaaaaaattagagatcttgctagggaggttgaagcaaaggctttacaag |
8270029 |
T |
|
| Q |
301 |
attcacccttgaacctttatatcatgacatatgtttgttcatgttttctcaagtggctttacgtacgacaaatttgagatcttgttgtggagtatgaagc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
8270030 |
attcacccttgaacctttatatcatgacatatgtttgttcatgttttctcaagtggctttacgtacgacaaatttgagatcttgctgtggagtatgaagc |
8270129 |
T |
|
| Q |
401 |
aaagaattacaagattcattcttgggccaaatatgtgagatgtctattaaccattggatgagtgagtcaaccatgtttggaattcaatatcgaaatttga |
500 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8270130 |
aaagaattacaagattcattcttgggccaaatatgtgagatgtctattaaccattggatgagtgagtcaaccatgtttggaattcaatatcgaaatttga |
8270229 |
T |
|
| Q |
501 |
aagaaaaataaaaattaacttgatgctaaacaaataaatagaccttacaaaaggaa |
556 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8270230 |
aagaaaaataaaaattaacttgatgctaaacaaataaatagaccttacaaaaggaa |
8270285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 601 - 659
Target Start/End: Original strand, 8270342 - 8270400
Alignment:
| Q |
601 |
ataatgagtctcttggttgatactcaacatgacatagtattaaattaatgacaactcta |
659 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
8270342 |
ataatgagtctcttggttgatactcaacatgacatagtattaaattaataacaactcta |
8270400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 81; Significance: 9e-38; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 43452637 - 43452506
Alignment:
| Q |
1 |
tctttgttgtaggcttgggtgtataagcacttcagcgtgtataagcagcaaggatgcgtggggtggatatcgggataatcagcatccacgcgccatattt |
100 |
Q |
| |
|
|||||||| ||| |||||||||| | |||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||| |
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| T |
43452637 |
tctttgttacaggattgggtgtatcaacacttcaggg-gtataagcagcaaggatgcgtggggtggatatcgggatgatcagcatccacacgccatgttt |
43452539 |
T |
|
| Q |
101 |
tttgcaccacggatgggtttgtctacaccaaac |
133 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||| |
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|
| T |
43452538 |
tttgcaccacgggtgggtttgtctacaacaaac |
43452506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 17221224 - 17221095
Alignment:
| Q |
1 |
tctttgttgtaggcttgggtgtataagcacttcagcgtgtataagcagcaaggatgcgtggggtggatatcgggataatcagcatccacgcgccat-att |
99 |
Q |
| |
|
||||||||| |||||| | | ||| |||||||||| || |||| ||||||||||||||||| |||||||||||||| || ||||||||| ||||| | |
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|
| T |
17221224 |
tctttgttgcaggcttagatttattagcacttcagggt-tatatgcagcaaggatgcgtggagtggatatcgggatgatatgcatccacgagccatgcat |
17221126 |
T |
|
| Q |
100 |
ttttgcaccacggatgggtttgtctacacca |
130 |
Q |
| |
|
||||||||||||||| ||||||||||||||| |
|
|
| T |
17221125 |
ttttgcaccacggattggtttgtctacacca |
17221095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 8e-26; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 39 - 159
Target Start/End: Complemental strand, 25060700 - 25060580
Alignment:
| Q |
39 |
gtataagcagcaaggatgcgtggggtggatatcgggataatcagcatccacgcgccatattttttgcaccacggatgggtttgtctacaccaaacaagta |
138 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| || ||||||||| ||||| |||||||||||| ||| ||||||||||||| | || |||| |
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|
| T |
25060700 |
gtataggcagcaaggatgcgtggggtggatatcgggatgatatgcatccacgtgccatgctttttgcaccacagattggtttgtctacactagacgagta |
25060601 |
T |
|
| Q |
139 |
cagaggttacctggatgcgct |
159 |
Q |
| |
|
|||||| | ||||||||||| |
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| T |
25060600 |
cagaggccatctggatgcgct |
25060580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 30145485 - 30145627
Alignment:
| Q |
1 |
tctttgttgtaggcttgggtgtataagcacttcagcgtgtataagcagcaaggatgcgtggggtggatatcgggataatcagcatccacgcgccatattt |
100 |
Q |
| |
|
||||||||| |||||||||||||| | ||||||| | |||| ||| |||||||| |||||||||||||||||| | ||||||||||||||| || |
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|
| T |
30145485 |
tctttgttgcaggcttgggtgtatcatcacttcaa-gcgtatgggcaacaaggatgtgtggggtggatatcgggaaggtaggcatccacgcgccatgctt |
30145583 |
T |
|
| Q |
101 |
tttgcaccacggatgggtttgtctacaccaaacaagtacagagg |
144 |
Q |
| |
|
|||||||||||| ||||||||||| ||||| || |||||||||| |
|
|
| T |
30145584 |
tttgcaccacgggtgggtttgtctgcaccagacgagtacagagg |
30145627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 28245035 - 28245198
Alignment:
| Q |
1 |
tctttgttgtaggcttgggtgtataagcacttcagcgtgtataagcagcaaggatgcgtggggtggatatcgggataatcagcatccacgcgccatattt |
100 |
Q |
| |
|
||||||||| |||||||| ||| | |||||||| || |||| |||||||||||| |||||||||||||| |||| || ||||||||||||||| || |
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|
| T |
28245035 |
tctttgttgcaggcttggacttatcaacacttcagggt-tataggcagcaaggatgtgtggggtggatatcaggatgatatgcatccacgcgccatgctt |
28245133 |
T |
|
| Q |
101 |
tttgcaccacggatgggtttgtctacaccaaacaagtacagaggttacctggatgcgctagatct |
165 |
Q |
| |
|
|||||| ||| ||||||||| |||||||||| |||||||| | ||||||||||| ||||| |
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|
| T |
28245134 |
tttgcatcacaagtgggtttgtttacaccaaactcatacagagggcatctggatgcgctggatct |
28245198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 61 - 133
Target Start/End: Original strand, 902181 - 902253
Alignment:
| Q |
61 |
gggtggatatcgggataatcagcatccacgcgccatattttttgcaccacggatgggtttgtctacaccaaac |
133 |
Q |
| |
|
|||||||||||||||| || ||||||||| ||||| |||||||||||||| ||||||| |||||||||||| |
|
|
| T |
902181 |
gggtggatatcgggatgatatgcatccacgtgccatgctttttgcaccacgggtgggtttttctacaccaaac |
902253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 42458618 - 42458480
Alignment:
| Q |
1 |
tctttgttgtaggcttgggtgtataagcacttcagcgtgtataagcagcaaggatgcgtggggtggatatcgggataatcagcatccacgcgccatattt |
100 |
Q |
| |
|
||||||||| | ||||| |||||| | || ||||| | ||||| ||| |||||||||||||||||||||| |||| |||| ||||| | ||||| || |
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|
| T |
42458618 |
tctttgttgcatgcttgagtgtatcaacatttcaggg-gtataggcaacaaggatgcgtggggtggatattgggaacatcaacatccgtgtgccatgctt |
42458520 |
T |
|
| Q |
101 |
tttgcaccacggatgggtttgtctacaccaaacaagtaca |
140 |
Q |
| |
|
| |||||||| | ||||||| ||| ||||| || |||||| |
|
|
| T |
42458519 |
tctgcaccacaggtgggtttatctgcaccagacgagtaca |
42458480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 49 - 125
Target Start/End: Original strand, 12752617 - 12752693
Alignment:
| Q |
49 |
caaggatgcgtggggtggatatcgggataatcagcatccacgcgccatattttttgcaccacggatgggtttgtcta |
125 |
Q |
| |
|
||||| ||||||||||||||||||||| |||||||||||||||||| |||||| || |||| |||||||||||| |
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|
| T |
12752617 |
caagggtgcgtggggtggatatcgggaacgtcagcatccacgcgccatgctttttgtactacgggtgggtttgtcta |
12752693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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