View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8645_5 (Length: 300)
Name: NF8645_5
Description: NF8645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8645_5 |
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Alignment Details
Target: chr8 (Bit Score: 155; Significance: 3e-82; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 134 - 292
Target Start/End: Complemental strand, 8270285 - 8270127
Alignment:
| Q |
134 |
ttccttttgtaaggtctatttatttgtttagcatcaagttaatttttatttttctttcaaatttcgatattgaattccaaacatggttgactcactcatc |
233 |
Q |
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| T |
8270285 |
ttccttttgtaaggtctatttatttgtttagcatcaagttaatttttatttttctttcaaatttcgatattgaattccaaacatggttgactcactcatc |
8270186 |
T |
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| Q |
234 |
caatggttaatagacatctcacatatttggcccaagaatgaatcttgtaattctctgct |
292 |
Q |
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| T |
8270185 |
caatggttaatagacatctcacatatttggcccaagaatgaatcttgtaattctttgct |
8270127 |
T |
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Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 29 - 87
Target Start/End: Complemental strand, 8270400 - 8270342
Alignment:
| Q |
29 |
tagagttgtcattaatttaatactatgtcatgttgagtatcaaccaagagactcattat |
87 |
Q |
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| T |
8270400 |
tagagttgttattaatttaatactatgtcatgttgagtatcaaccaagagactcattat |
8270342 |
T |
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