View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8645_low_1 (Length: 443)
Name: NF8645_low_1
Description: NF8645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8645_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 390; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 19 - 434
Target Start/End: Complemental strand, 47350186 - 47349774
Alignment:
| Q |
19 |
tcagcaacttcttccaacttcgtaggttgaagctcgttctccttcacaatctcatcccaaactggacccttatccttcatcatctcagccaaccttaaac |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47350186 |
tcagcaacttcttccaacttcgtaggttgaagctcgttctccttcacaatctcatcccaaactggacccttatccttcatcatctcagccaaccttaaac |
47350087 |
T |
|
| Q |
119 |
gaggacagtcctcgtatgcatactcctcaatctcaaattgttccgtcaaaaccttccacaattgtttccacctaaaaacatcaccattgctacaattgaa |
218 |
Q |
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|||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47350086 |
gaggaccgtcctcgtatccatactcctcaatctcaaattgttccgtcaaaaccttccacaattgtttccacctaaaaacatcaccattgctacaattgaa |
47349987 |
T |
|
| Q |
219 |
cgcttcattcttagcataagtatccactgcagcccaaatgtgttgctctgcaatcaaatctgcatccgaagccatataataactctcccaagctctcttg |
318 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47349986 |
cgcttcattcttagcataagtatccactgcagcccaaatgtgttgctctgcaatcaaatctgcatccgaagccatataataactctcccaagctctcttg |
47349887 |
T |
|
| Q |
319 |
gtaccgggaaatgtcaaagaaatgtgttcatgcttgcaaattgcagcgtaaaggcaaagcgtgccaacaacaatattcatcaaactgtaaggtgagaatc |
418 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
47349886 |
gtaccgggaaatttcaaagaaatgtgttcatgcttgcaaattgcagcgtaaaggcaaagcgtgccaacaac---attcatcaaactgtaaggtgagaatc |
47349790 |
T |
|
| Q |
419 |
caaagatgagaagggg |
434 |
Q |
| |
|
|||||||||||||||| |
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| T |
47349789 |
caaagatgagaagggg |
47349774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 55 - 431
Target Start/End: Original strand, 3818733 - 3819109
Alignment:
| Q |
55 |
ttctccttcacaatctcatcccaaactggacccttatccttcatcatctcagccaaccttaaacgaggacagtcctcgt---atgcatactcctcaatct |
151 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||| ||| | ||| | |||||||||| ||||||| | |||||||||||||| |
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| T |
3818733 |
ttctccttcacaatctcatcccaaacaggacccttatccttcatcaactccgttaacttcaaacgaggaccttcctcgtcgaacccatactcctcaatcc |
3818832 |
T |
|
| Q |
152 |
caaattgttccgtcaaaaccttccacaattgtttccacctaaaaacatcaccattgctacaattgaacgcttcattcttagcataagtatccactgcagc |
251 |
Q |
| |
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|||||||||||| | ||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||| |
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| T |
3818833 |
caaattgttccgcgataaccttccacaattgcttccacctaaaaacatcaccattactacaattgaatgcttcattcttagcataaggatccactgcagc |
3818932 |
T |
|
| Q |
252 |
ccaaatgtgttgctctgcaatcaaatctgcatccgaagccatataataactctcccaagctctcttggtaccgggaaatgtcaaagaaatgtgttcatgc |
351 |
Q |
| |
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|||||| ||||| || ||||||||||||||||| |||||||| || ||| ||||||||||| ||| || || |||||| |||| | || |||||| |
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| T |
3818933 |
ccaaatatgttgttcagcaatcaaatctgcatcagaagccatgtagtaattctcccaagctaacttagtccctggaaatctcaacggaacaccctcatgc |
3819032 |
T |
|
| Q |
352 |
ttgcaaattgcagcgtaaaggcaaagcgtgccaacaacaatattcatcaaactgtaaggtgagaatccaaagatgagaag |
431 |
Q |
| |
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|| |||||||||||||||| |||| || | ||| |||||||||| |||||||||||| ||||||||||||||||| |
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|
| T |
3819033 |
ttacaaattgcagcgtaaacacaaatagttc---caatgatattcatcatactgtaaggtgaaaatccaaagatgagaag |
3819109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 55 - 431
Target Start/End: Complemental strand, 47339144 - 47338768
Alignment:
| Q |
55 |
ttctccttcacaatctcatcccaaactggacccttatccttcatcatctcagccaaccttaaacgaggacagtcctcgt---atgcatactcctcaatct |
151 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||| ||| | ||| | |||||||||| ||||||| | |||||||||||||| |
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|
| T |
47339144 |
ttctccttcacaatctcatcccaaacaggacccttatccttcatcaactccgttaacttcaaacgaggaccttcctcgtcgaacccatactcctcaatcc |
47339045 |
T |
|
| Q |
152 |
caaattgttccgtcaaaaccttccacaattgtttccacctaaaaacatcaccattgctacaattgaacgcttcattcttagcataagtatccactgcagc |
251 |
Q |
| |
|
|||||||||||| | ||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||| |
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|
| T |
47339044 |
caaattgttccgcgataaccttccacaattgcttccacctaaaaacatcaccattactacaattgaatgcttcattcttagcataaggatccactgcagc |
47338945 |
T |
|
| Q |
252 |
ccaaatgtgttgctctgcaatcaaatctgcatccgaagccatataataactctcccaagctctcttggtaccgggaaatgtcaaagaaatgtgttcatgc |
351 |
Q |
| |
|
|||||| |||||||| ||||||||||| ||||| |||||||| || ||| ||||||||||| ||| || || |||||| |||| | || |||||| |
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| T |
47338944 |
ccaaatatgttgctcagcaatcaaatcagcatcagaagccatgtagtaattctcccaagctaacttagtccctggaaatctcaacggaacaccctcatgc |
47338845 |
T |
|
| Q |
352 |
ttgcaaattgcagcgtaaaggcaaagcgtgccaacaacaatattcatcaaactgtaaggtgagaatccaaagatgagaag |
431 |
Q |
| |
|
|| |||||||||||||||| |||| || | ||| |||||||||| |||||||||||| ||||||||||||||||| |
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|
| T |
47338844 |
ttacaaattgcagcgtaaacacaaatagttc---caatgatattcatcatactgtaaggtgaaaatccaaagatgagaag |
47338768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 55 - 422
Target Start/End: Complemental strand, 47347614 - 47347247
Alignment:
| Q |
55 |
ttctccttcacaatctcatcccaaactggacccttatccttcatcatctcagccaaccttaaacgaggacagtcctcgt---atgcatactcctcaatct |
151 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||| ||| | |||| | |||||||||| ||||||| | |||||||||||||| |
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|
| T |
47347614 |
ttctccttcacaatctcatcccaaacaggacccttatccttcatcaactccgacaacttcaaacgaggaccttcctcgtcaaacccatactcctcaatcc |
47347515 |
T |
|
| Q |
152 |
caaattgttccgtcaaaaccttccacaattgtttccacctaaaaacatcaccattgctacaattgaacgcttcattcttagcataagtatccactgcagc |
251 |
Q |
| |
|
|||| ||||||| |||||||||||| | ||||||||| ||||||||||||||||||||||| || || ||||| ||||||||||||| ||||||||| || |
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|
| T |
47347514 |
caaactgttccgccaaaaccttccatagttgtttccatctaaaaacatcaccattgctacagttaaaagcttcgttcttagcataaggatccactgcggc |
47347415 |
T |
|
| Q |
252 |
ccaaatgtgttgctctgcaatcaaatctgcatccgaagccatataataactctcccaagctctcttggtaccgggaaatgtcaaagaaatgtgttcatgc |
351 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||| ||||||| | ||||| ||||||||||| ||| |||||||||||| |||| | || ||| ||| |
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|
| T |
47347414 |
ccaaatatgttgctctgcaatcaaatccgcatcagaagccacagaataagactcccaagctccctttgtaccgggaaatttcaacggaacaccttcgtgc |
47347315 |
T |
|
| Q |
352 |
ttgcaaattgcagcgtaaaggcaaagcgtgccaacaacaatattcatcaaactgtaaggtgagaatccaaa |
422 |
Q |
| |
|
|||||||||||||| |||| ||||| || | |||| | |||||||||||| |||||||| |||||||| |
|
|
| T |
47347314 |
ttgcaaattgcagcataaacacaaagtgt---accaacgagattcatcaaactataaggtgaaaatccaaa |
47347247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 5e-20; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 169 - 263
Target Start/End: Original strand, 5390987 - 5391081
Alignment:
| Q |
169 |
accttccacaattgtttccacctaaaaacatcaccattgctacaattgaacgcttcattcttagcataagtatccactgcagcccaaatgtgttg |
263 |
Q |
| |
|
||||||||||| ||||||||||| |||||||| |||||||| || ||||| ||||||||||| |||| || |||||||||| ||||||| ||||| |
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|
| T |
5390987 |
accttccacaaatgtttccacctgaaaacatcgccattgctgcagttgaatgcttcattctttgcattaggatccactgcaccccaaatatgttg |
5391081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 169 - 263
Target Start/End: Original strand, 5399706 - 5399800
Alignment:
| Q |
169 |
accttccacaattgtttccacctaaaaacatcaccattgctacaattgaacgcttcattcttagcataagtatccactgcagcccaaatgtgttg |
263 |
Q |
| |
|
||||||||||| ||||||||||| |||||||| |||||||| || ||||| ||||||||||| |||| || |||||||||| ||||||| ||||| |
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|
| T |
5399706 |
accttccacaaatgtttccacctgaaaacatcgccattgctgcagttgaatgcttcattctttgcattaggatccactgcaccccaaatatgttg |
5399800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 169 - 308
Target Start/End: Original strand, 5394525 - 5394664
Alignment:
| Q |
169 |
accttccacaattgtttccacctaaaaacatcaccattgctacaattgaacgcttcattcttagcataagtatccactgcagcccaaatgtgttgctctg |
268 |
Q |
| |
|
||||||||||| ||||||||| | |||||||||||||| || |||||||| ||||||||||| || | || |||| ||||| ||||||| ||||| || | |
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|
| T |
5394525 |
accttccacaaatgtttccacttgaaaacatcaccattactgcaattgaatgcttcattctttgcgttaggatccgctgcaccccaaatatgttgttcgg |
5394624 |
T |
|
| Q |
269 |
caatcaaatctgcatccgaagccatataataactctccca |
308 |
Q |
| |
|
| || |||| ||||| ||||| || |||||| |||||| |
|
|
| T |
5394625 |
ctattaaattagcatctgaagcagtagaataacactccca |
5394664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 385
Target Start/End: Original strand, 5391164 - 5391203
Alignment:
| Q |
346 |
tcatgcttgcaaattgcagcgtaaaggcaaagcgtgccaa |
385 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
5391164 |
tcatgcttgcaaattgcagcgtaaacacaaagcgtgccaa |
5391203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 385
Target Start/End: Original strand, 5399883 - 5399922
Alignment:
| Q |
346 |
tcatgcttgcaaattgcagcgtaaaggcaaagcgtgccaa |
385 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
5399883 |
tcatgcttgcaaattgcagcgtaaacacaaagcgtgccaa |
5399922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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