View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8646_high_1 (Length: 502)
Name: NF8646_high_1
Description: NF8646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8646_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 448; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 7 - 486
Target Start/End: Original strand, 2306341 - 2306820
Alignment:
| Q |
7 |
tttggtggttgtgtgaaggccatgaaagaaacttccaaggagttggataagattgttgatgagtggttgaaagagcatcgccatgaaaggactaatttgg |
106 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2306341 |
tttggtggttatgtgaaggccatgaaagaaacttccaaggagttggataagattgttgatgagtggttgaaagagcatcgccatgaaaggactaatttgg |
2306440 |
T |
|
| Q |
107 |
ttgaaaaagttgatgatcaaggtaatcaagatatcatggatgtgttactttcattgcttgatggaacaaccattgaagggtttgatggtgataccataat |
206 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
2306441 |
ttgaaaaacttgatgatcaaggtaatcaagatatcatggatgtgttgctttcattgcttgatggaacaaccatcgaagggtttgatggtgataccataat |
2306540 |
T |
|
| Q |
207 |
caaagccacaatattggtatgtatattttaattgtgacctcgctatatttgatagaagtggtaaatagattagataatttataactaaaaatttatagca |
306 |
Q |
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||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2306541 |
caaagccacgatattggtatgtatattttacttgtgacctcgctatatttgataaaagtggtaaatagattagataatttataactaaaaatttatagca |
2306640 |
T |
|
| Q |
307 |
aaacttagttataatatactttcaagggtgcttgcttagagatttaaaaggagagttcaatggtggactttcaccatttttaataaaataacgaattttg |
406 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2306641 |
aaacttagttataatatattttcaagggtgcttgcttagagatttaaaaggagagttcaatggtggactttcaccatttttaataaaataacgaattttg |
2306740 |
T |
|
| Q |
407 |
ttaagaaaataaataaagtgggagagaaaacgatgaattttcaacttcaaacatttgtattgagttccatattagaaaca |
486 |
Q |
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| T |
2306741 |
ttaagaaaataaataaagtgggagagaaaacgatgaattttcaacttcaaacatttgtattgagttccatattagaaaca |
2306820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 7 - 230
Target Start/End: Original strand, 2338662 - 2338882
Alignment:
| Q |
7 |
tttggtggttgtgtgaaggccatgaaagaaacttccaaggagttggataagattgttgatgagtggttgaaagagcatcgccatgaaaggactaatttgg |
106 |
Q |
| |
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|||||||||| ||||||| |||||||||||||||||||||||||||| |||||| |||||||||||||||| |||| ||||||| |||||||| |||| |
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| T |
2338662 |
tttggtggttatgtgaagaccatgaaagaaacttccaaggagttggacaagatttttgatgagtggttgaaggagcgtcgccataaaaggact---ttgg |
2338758 |
T |
|
| Q |
107 |
ttgaaaaagttgatgatcaaggtaatcaagatatcatggatgtgttactttcattgcttgatggaacaaccattgaagggtttgatggtgataccataat |
206 |
Q |
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||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
2338759 |
ttgaaaaccttgatgatcaaggtaatcaagacatcatggatgtgttactttcattgcttgatggaacaaccattgaagggtttgacggtgataccataat |
2338858 |
T |
|
| Q |
207 |
caaagccacaatattggtatgtat |
230 |
Q |
| |
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|||||||||| ||||||||||||| |
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| T |
2338859 |
caaagccacactattggtatgtat |
2338882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 66 - 230
Target Start/End: Original strand, 2349764 - 2349922
Alignment:
| Q |
66 |
tgagtggttgaaagagcatcgccatgaaaggactaatttggttgaaaaagttgatgatcaaggtaatcaagatatcatggatgtgttactttcattgctt |
165 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||| ||| |||||| | ||||||||||| ||||||| ||||||||||||||| ||||||||||| |
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| T |
2349764 |
tgagtggttgaaggagcatcgccataaaaggact---ttgactgaaaaggctgatgatcaag---atcaagacatcatggatgtgttaatttcattgctt |
2349857 |
T |
|
| Q |
166 |
gatggaacaaccattgaagggtttgatggtgataccataatcaaagccacaatattggtatgtat |
230 |
Q |
| |
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||||||| |||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||| |
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|
| T |
2349858 |
gatggaaaaaccatggaagggtttgattgtgataccataatcaaagcaacaatattggtatgtat |
2349922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 131 - 229
Target Start/End: Original strand, 2366767 - 2366865
Alignment:
| Q |
131 |
atcaagatatcatggatgtgttactttcattgcttgatggaacaaccattgaagggtttgatggtgataccataatcaaagccacaatattggtatgta |
229 |
Q |
| |
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||||||| ||||||||||| | ||||||||| ||||||||||||| |||||||| |||||| |||||||||||||||||||||| |||||||||||| |
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| T |
2366767 |
atcaagacttcatggatgtgatgctttcattgtttgatggaacaacaattgaaggatttgattctgataccataatcaaagccacagtattggtatgta |
2366865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 233 - 312
Target Start/End: Original strand, 2338927 - 2339006
Alignment:
| Q |
233 |
tttaattgtgacctcgctatatttgatagaagtggtaaatagattagataatttataactaaaaatttatagcaaaactt |
312 |
Q |
| |
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|||| |||||| |||||||||||||||| || | ||||||| ||||||||||||||||||||||||| || | ||||||| |
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|
| T |
2338927 |
tttacttgtgatctcgctatatttgataaaaatagtaaataaattagataatttataactaaaaattgatcgtaaaactt |
2339006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 131 - 231
Target Start/End: Original strand, 2356462 - 2356563
Alignment:
| Q |
131 |
atcaagatatcatggatgtgttactttcattgcttgatggaacaaccattgaaggg-tttgatggtgataccataatcaaagccacaatattggtatgta |
229 |
Q |
| |
|
|||||||| ||||||| | || |||||| || ||||||||||||| ||||||||| ||||||| ||||||| |||||||||||| || |||||||||| |
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| T |
2356462 |
atcaagatttcatggacgcattgctttcactgtttgatggaacaacaattgaagggttttgatgccgataccacaatcaaagccacgatgttggtatgta |
2356561 |
T |
|
| Q |
230 |
ta |
231 |
Q |
| |
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|| |
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|
| T |
2356562 |
ta |
2356563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 131 - 228
Target Start/End: Original strand, 2362157 - 2362254
Alignment:
| Q |
131 |
atcaagatatcatggatgtgttactttcattgcttgatggaacaaccattgaagggtttgatggtgataccataatcaaagccacaatattggtatgt |
228 |
Q |
| |
|
||||||| ||||||||| || |||||||||||||||| |||| | |||||||||| |||| |||||| | ||||||||| ||||||||||||||| |
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| T |
2362157 |
atcaagacttcatggatgccttgctttcattgcttgatgaaacaccaattgaagggtgtgattctgatactacaatcaaagcgacaatattggtatgt |
2362254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 131 - 232
Target Start/End: Complemental strand, 5805514 - 5805413
Alignment:
| Q |
131 |
atcaagatatcatggatgtgttactttcattgcttgatggaacaaccattgaagggtttgatggtgataccataatcaaagccacaatattggtatgtat |
230 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||||||| |
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|
| T |
5805514 |
atcaagacttcatggatgtgttactttcattgcttgatggaacaactattgaagggtttgattgtgataccatgatcaaagccacaatattggtatgtat |
5805415 |
T |
|
| Q |
231 |
at |
232 |
Q |
| |
|
|| |
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|
| T |
5805414 |
at |
5805413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 131 - 228
Target Start/End: Original strand, 4303928 - 4304025
Alignment:
| Q |
131 |
atcaagatatcatggatgtgttactttcattgcttgatggaacaaccattgaagggtttgatggtgataccataatcaaagccacaatattggtatgt |
228 |
Q |
| |
|
||||||| ||||||||||| | ||||||||||||||||||||||| |||||||| |||||| ||||||| ||||||||||||||||| |||||||| |
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| T |
4303928 |
atcaagacttcatggatgtgatgctttcattgcttgatggaacaacaattgaaggatttgattctgataccgtaatcaaagccacaatactggtatgt |
4304025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 140 - 230
Target Start/End: Original strand, 41342076 - 41342169
Alignment:
| Q |
140 |
tcatggatgtgttactttcattgcttgatggaacaaccattgaagggtttgatggtga---taccataatcaaagccacaatattggtatgtat |
230 |
Q |
| |
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||||||||||| | |||||||||||| |||||||||| |||||| | |||||| ||| |||||| |||||||||||||||||||||||||| |
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| T |
41342076 |
tcatggatgtgatgctttcattgcttaatggaacaacaattgaaagatttgattctgatactaccatcatcaaagccacaatattggtatgtat |
41342169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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