View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8646_high_2 (Length: 496)
Name: NF8646_high_2
Description: NF8646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8646_high_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 409; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 13 - 433
Target Start/End: Original strand, 1606267 - 1606687
Alignment:
| Q |
13 |
caagaaggttttgtacttgtcaacaacaggctttagatccgatgcagccctaatttgacaattgtggaatgaaattccagtgttttggaatgggtcacct |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1606267 |
caagaaggttttgtacttgtcaacaacaggctttagatctgatgcagccctaatttgacaattgtggaatgaaattccagtgttttggaatgggtcacct |
1606366 |
T |
|
| Q |
113 |
cgaccttgggctgtgatcatgttagcttgaccatctaaaggttttcttgcgaaaatgttacaattttggaaaaccactgcggcattgccaaagatgaagt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1606367 |
cgaccttgggctgtgatcatgttagcttgaccatctaaaggttttcttgcgaaaatgttacaattttggaaaaccactgcggcattgccaaagatgaagt |
1606466 |
T |
|
| Q |
213 |
ctacggtgccatagatgaagcattgtcgataaaattgacgttgtgcatgagccatcagagtgtcttgataacctgatatggcacaccgatagaaaactga |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1606467 |
ctacggtgccatagatgaagcattgtcgataaaattgacgttgtgcatgagccatcagagtgtcttgataacctgatatggcacaccgatagaaaactga |
1606566 |
T |
|
| Q |
313 |
gagatcggaggctgatcttagcgccacagcttgacccttgtgtggaccggcggtattttggaaggttatgtctcgtgcaatgaagtgaagtccatcaata |
412 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
1606567 |
gagatcggaggctgatcttagcgccactgcttgacccttgtgtggaccggcggtattttggaaggttatgtcacgtgcaatgaagtgaagtccatcaata |
1606666 |
T |
|
| Q |
413 |
cctaaatttaaatgatccaag |
433 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
1606667 |
cctaaatttaaatgatccaag |
1606687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 13 - 448
Target Start/End: Original strand, 1629565 - 1630000
Alignment:
| Q |
13 |
caagaaggttttgtacttgtcaacaacaggctttagatccgatgcagccctaatttgacaattgtggaatgaaattccagtgttttggaatgggtcacct |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1629565 |
caagaaggttttgtacttgtcaacaacaggttttagatctgatgcagccctaatttgacaattgtggaatgaaattccagtgttttggaatgggtcacct |
1629664 |
T |
|
| Q |
113 |
cgaccttgggctgtgatcatgttagcttgaccatctaaaggttttcttgcgaaaatgttacaattttggaaaaccactgcggcattgccaaagatgaagt |
212 |
Q |
| |
|
||||||||||| ||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
1629665 |
cgaccttgggcagtgatcatgtttgcttggccatctaaaggctttcttgcgaaaatgttacaattttggaataccactgcggcgttgccaaagatgaagt |
1629764 |
T |
|
| Q |
213 |
ctacggtgccatagatgaagcattgtcgataaaattgacgttgtgcatgagccatcagagtgtcttgataacctgatatggcacaccgatagaaaactga |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1629765 |
ctacggtgccatagatgaagcattgtcgataaaattgacgttgtgcatgagccatcagagtgtcttgataacctgatatggcacaccgatagaaaactga |
1629864 |
T |
|
| Q |
313 |
gagatcggaggctgatcttagcgccacagcttgacccttgtgtggaccggcggtattttggaaggttatgtctcgtgcaatgaagtgaagtccatcaata |
412 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1629865 |
gagatcggacgctgatcttagcgccacagcttgacccttgtgtggaccggcggtattttggaaggttatgtctcgtgcaatgaagtgaagtccatcaata |
1629964 |
T |
|
| Q |
413 |
cctaaatttaaatgatccaagcgtaattatttaaaa |
448 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| |
|
|
| T |
1629965 |
cctaaatttaaatgatccaagagtaattatttaaaa |
1630000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 14 - 487
Target Start/End: Complemental strand, 10821132 - 10820658
Alignment:
| Q |
14 |
aagaaggttttgtacttgtcaacaacaggctttagatccgatgcagccctaatttgacaattgtggaatgaaattccagtgttttggaatgggtcacctc |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
10821132 |
aagaaggttttgtacttgtcaacaacaggctttagatctgatgcagccctaatttgacaattgtggaatgaaattccagtgttttggaatggatcacctc |
10821033 |
T |
|
| Q |
114 |
gaccttgggctgtgatcatgttagcttgaccatctaaaggttttcttgcgaaaatgttacaattttggaaaaccactgcggcattgccaaagatgaagtc |
213 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||| || ||||||||||||||||| |
|
|
| T |
10821032 |
gaccttgggcagtgatcatgttagcttggccatctaaaggttttcttgcgaaaatgttgcaattttggaataccactgcagcgttgccaaagatgaagtc |
10820933 |
T |
|
| Q |
214 |
tacggtgccatagatgaagcattgtcgataaaattgacgttgtgcatgagccatcagagtgtcttgataacctgatatggcacaccgatagaaaactgag |
313 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||| ||||| ||||| | |||||| ||||| || ||| |
|
|
| T |
10820932 |
tacggtgccatagatgaagcattgtctgtaaaattgacgttgtgcatgagccatgagggtgtcttggtaacccgatattgtacaccggtagaagacggag |
10820833 |
T |
|
| Q |
314 |
agatcggaggctgatcttagcgccacagcttgacccttgtgtggaccggcggtattttggaaggttatgtctcgtgcaatgaagtgaagtccatcaatac |
413 |
Q |
| |
|
||||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
10820832 |
agatcagaggctgatcggagcgccactgcttgacccttgtgtggaccggcggtattttggaaggttatgtcacgtgcaatgaagtgaagtccatcaatac |
10820733 |
T |
|
| Q |
414 |
ctaaatttaaatgatccaagcgtaattatttaaaaa-atgaaattaattgtatgtaagaaagtcacaagtataat |
487 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| |||||| |||||||| ||||||||| ||||| |||||| |
|
|
| T |
10820732 |
ctaaatttaaatgatccaagagtaattatttaaaaatatgaaagtaattgtaggtaagaaagccacaattataat |
10820658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 13 - 433
Target Start/End: Original strand, 1623389 - 1623809
Alignment:
| Q |
13 |
caagaaggttttgtacttgtcaacaacaggctttagatccgatgcagccctaatttgacaattgtggaatgaaattccagtgttttggaatgggtcacct |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1623389 |
caagaaggttttgtacttgtcaacaacaggctttagatctgatgcagccctaatttgacaattgtggaatgaaattccagtgttttggaatgggtcacca |
1623488 |
T |
|
| Q |
113 |
cgaccttgggctgtgatcatgttagcttgaccatctaaaggttttcttgcgaaaatgttacaattttggaaaaccactgcggcattgccaaagatgaagt |
212 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||| |||||||| || ||||| || |||||||||||||||| |
|
|
| T |
1623489 |
cgaccttgggctgtgatcatgttagcttggccatccaaaggctttcttgcgaaaatgttacagttttggaatactactgcagcgttgccaaagatgaagt |
1623588 |
T |
|
| Q |
213 |
ctacggtgccatagatgaagcattgtcgataaaattgacgttgtgcatgagccatcagagtgtcttgataacctgatatggcacaccgatagaaaactga |
312 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||| || || |
|
|
| T |
1623589 |
ctacggtgccatagatgaagcattgtcggtagaattgacgttgtgcatgagccatcagagtgtcttgatagcccgatatagcacaccgatagaagacaga |
1623688 |
T |
|
| Q |
313 |
gagatcggaggctgatcttagcgccacagcttgacccttgtgtggaccggcggtattttggaaggttatgtctcgtgcaatgaagtgaagtccatcaata |
412 |
Q |
| |
|
||||||||||||||||| |||||||||||||| || ||||| ||||| || |||||||| ||||| ||||| ||||||||||| |||||||||||||| |
|
|
| T |
1623689 |
gagatcggaggctgatcggagcgccacagcttggcctttgtgaggaccagcagtattttgaaaggtaatgtcacgtgcaatgaaatgaagtccatcaatg |
1623788 |
T |
|
| Q |
413 |
cctaaatttaaatgatccaag |
433 |
Q |
| |
|
||| |||||||| ||| |||| |
|
|
| T |
1623789 |
cctgaatttaaaagattcaag |
1623809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 167 - 228
Target Start/End: Complemental strand, 2576132 - 2576071
Alignment:
| Q |
167 |
atgttacaattttggaaaaccactgcggcattgccaaagatgaagtctacggtgccatagat |
228 |
Q |
| |
|
|||||||||||||||||||| || || || ||||| || |||||||| |||||||||||||| |
|
|
| T |
2576132 |
atgttacaattttggaaaactacagctgcgttgccgaaaatgaagtcgacggtgccatagat |
2576071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 13 - 433
Target Start/End: Original strand, 18781083 - 18781503
Alignment:
| Q |
13 |
caagaaggttttgtacttgtcaacaacaggctttagatccgatgcagccctaatttgacaattgtggaatgaaattccagtgttttggaatgggtcacct |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18781083 |
caagaaggttttgtacttgtcaacaacaggctttagatctgatgcagccataatttgacaattgtggaatgaaattccagtgttttggaatgggtcacct |
18781182 |
T |
|
| Q |
113 |
cgaccttgggctgtgatcatgttagcttgaccatctaaaggttttcttgcgaaaatgttacaattttggaaaaccactgcggcattgccaaagatgaagt |
212 |
Q |
| |
|
||||||||||| ||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||| || |||||||| ||||||||||| |||| |
|
|
| T |
18781183 |
cgaccttgggccgtgatcatgtttgcttggccatctaaaggctttcttgcgaaaatgttacaattttggaacactactgcggcgttgccaaagataaagt |
18781282 |
T |
|
| Q |
213 |
ctacggtgccatagatgaagcattgtcgataaaattgacgttgtgcatgagccatcagagtgtcttgataacctgatatggcacaccgatagaaaactga |
312 |
Q |
| |
|
| ||||||||||||||||||||||||| |||||||||||||| ||||| ||||| || |||||||| || || ||||| |||||||||||||| || || |
|
|
| T |
18781283 |
cgacggtgccatagatgaagcattgtctgtaaaattgacgttgcgcatgggccataagggtgtcttggtagcccgatatagcacaccgatagaagacaga |
18781382 |
T |
|
| Q |
313 |
gagatcggaggctgatcttagcgccacagcttgacccttgtgtggaccggcggtattttggaaggttatgtctcgtgcaatgaagtgaagtccatcaata |
412 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| || || ||||| || |||||||||||||||||||| || |||||||| |||||||||||||| |
|
|
| T |
18781383 |
gagatcggaggctgatcggagcgccacagcttgacctttatgaggaccagcagtattttggaaggttatgtcgcgggcaatgaaatgaagtccatcaatg |
18781482 |
T |
|
| Q |
413 |
cctaaatttaaatgatccaag |
433 |
Q |
| |
|
||| |||||||| ||| |||| |
|
|
| T |
18781483 |
cctgaatttaaaagattcaag |
18781503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 1e-33; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 83 - 416
Target Start/End: Original strand, 12802719 - 12803052
Alignment:
| Q |
83 |
gaaattccagtgttttggaatgggtcacctcgaccttgggctgtgatcatgttagcttgaccatctaaaggttttcttgcgaaaatgttacaattttgga |
182 |
Q |
| |
|
||||||||||||||||| ||||||||| | ||||||||||| ||||||||||| ||||| || | |||||| |||| | | ||| | || ||||||| |
|
|
| T |
12802719 |
gaaattccagtgttttgaaatgggtcatcacgaccttgggccgtgatcatgtttgcttggccgtttaaaggccttctaacaagaatcatgcagttttgga |
12802818 |
T |
|
| Q |
183 |
aaaccactgcggcattgccaaagatgaagtctacggtgccatagatgaagcattgtcgataaaattgacgttgtgcatgagccatcagagtgtcttgata |
282 |
Q |
| |
|
|||| || || || ||||||||||||||||| ||||||||||||||| | |||| || ||||||||||||||||| ||| |||| || |||||||| || |
|
|
| T |
12802819 |
aaactacggctgcgttgccaaagatgaagtcaacggtgccatagatgtaacattctctgtaaaattgacgttgtgcgtgaaccatgagggtgtcttggta |
12802918 |
T |
|
| Q |
283 |
acctgatatggcacaccgatagaaaactgagagatcggaggctgatcttagcgccacagcttgacccttgtgtggaccggcggtattttggaaggttatg |
382 |
Q |
| |
|
||| | || ||| || ||||| || || || || |||||||||| |||||||| |||||||| |||| || || || |||| || || ||| |
|
|
| T |
12802919 |
gcctttaaaggaacaacggtagaagacagataggtcagaggctgatcgaagcgccactgcttgaccacgacgtggtccagccgtgttttcaaaagtaatg |
12803018 |
T |
|
| Q |
383 |
tctcgtgcaatgaagtgaagtccatcaataccta |
416 |
Q |
| |
|
|| ||||||||||||||||| |||||||| |||| |
|
|
| T |
12803019 |
tcacgtgcaatgaagtgaagaccatcaattccta |
12803052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 155 - 229
Target Start/End: Complemental strand, 8767130 - 8767056
Alignment:
| Q |
155 |
tttcttgcgaaaatgttacaattttggaaaaccactgcggcattgccaaagatgaagtctacggtgccatagatg |
229 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| || ||||| || ||||||||||| || || |||||||||||| |
|
|
| T |
8767130 |
tttcttgcgaaaatgttacaattttgcaaaactaccgcggcgttaccaaagatgaaatcaactgtgccatagatg |
8767056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University