View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8646_low_3 (Length: 408)

Name: NF8646_low_3
Description: NF8646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8646_low_3
NF8646_low_3
[»] chr6 (14 HSPs)
chr6 (12-389)||(28327433-28327810)
chr6 (12-389)||(28505069-28505446)
chr6 (12-265)||(28236411-28236662)
chr6 (12-256)||(28295774-28296016)
chr6 (12-256)||(28516057-28516299)
chr6 (12-256)||(28187303-28187544)
chr6 (12-199)||(28244783-28244970)
chr6 (267-389)||(28524324-28524446)
chr6 (289-389)||(28190504-28190604)
chr6 (267-389)||(28245446-28245568)
chr6 (276-389)||(28238477-28238590)
chr6 (12-57)||(26341723-26341768)
chr6 (12-57)||(28096668-28096713)
chr6 (12-57)||(28151112-28151157)
[»] scaffold0019 (1 HSPs)
scaffold0019 (12-389)||(56212-56579)
[»] scaffold0038 (4 HSPs)
scaffold0038 (12-265)||(36573-36824)
scaffold0038 (12-199)||(44945-45132)
scaffold0038 (267-389)||(45608-45730)
scaffold0038 (276-389)||(38639-38752)
[»] chr5 (2 HSPs)
chr5 (21-134)||(16693016-16693129)
chr5 (313-356)||(16693294-16693337)
[»] chr2 (1 HSPs)
chr2 (12-57)||(3281587-3281632)


Alignment Details
Target: chr6 (Bit Score: 350; Significance: 0; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 12 - 389
Target Start/End: Original strand, 28327433 - 28327810
Alignment:
Q  12 gagatgaactcaagaagatgcaaaaccttaaaacacttattgttaagaatggtagcttttccaaaggtcctaaatattttcctgatagtattagagtatt 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28327433 gagatgaactcaagaagatgcaaaaccttaaaacacttattgttaagaatggtagcttttccaaaggtcctaaatattttcctgatagtattagagtatt 28327532  T
Q  112 ggaatggcataaatatccttcacggttcgtaccgtctgatattttcccaaacaaactttctgtatgcaagctacaggaaagtgacttttcatcatatgat 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||     
T  28327533 ggaatggcataaatatccttcacggttcgtaccgtctgatattttcccaaagaaacgttctgtatgcaagctacaggaaagtgacttttcatcatatgag 28327632  T
Q  212 ctgtgtggcacaatgaaggtatatgtgtaaatgtaatgattttttaccctcgtcttataagaatattcattcattcgttaattctttttcttttgcctta 311  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  28327633 ttgtgtggcacaatgaaggtatatgtgtaaatgtaatgattttttaccctcgtcttataagaatattcattcattcgttaattatttttcttttgtctta 28327732  T
Q  312 tattttgcagatgtttgtgaatatgagagagttaaatctagacaaatgtcaatttttaacatggatacacgacgtctc 389  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  28327733 tattttgcagatgtttgtgaatatgagagagttaaatctagacaaatgtcaatttttaacacggatacacgacgtctc 28327810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 12 - 389
Target Start/End: Original strand, 28505069 - 28505446
Alignment:
Q  12 gagatgaactcaagaagatgcaaaaccttaaaacacttattgttaagaatggtagcttttccaaaggtcctaaatattttcctgatagtattagagtatt 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28505069 gagatgaactcaagaagatgcaaaaccttaaaacacttattgttaagaatggtagcttttccaaaggtcctaaatattttcctgatagtattagagtatt 28505168  T
Q  112 ggaatggcataaatatccttcacggttcgtaccgtctgatattttcccaaacaaactttctgtatgcaagctacaggaaagtgacttttcatcatatgat 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||     
T  28505169 ggaatggcataaatatccttcacggttcgtaccgtctgatattttcccaaagaaacgttctgtatgcaagctacaggaaagtgacttttcatcatatgag 28505268  T
Q  212 ctgtgtggcacaatgaaggtatatgtgtaaatgtaatgattttttaccctcgtcttataagaatattcattcattcgttaattctttttcttttgcctta 311  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  28505269 ttgtgtggcacaatgaaggtatatgtgtaaatgtaatgattttttaccctcgtcttataagaatattcattcattcgttaattatttttcttttgtctta 28505368  T
Q  312 tattttgcagatgtttgtgaatatgagagagttaaatctagacaaatgtcaatttttaacatggatacacgacgtctc 389  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  28505369 tattttgcagatgtttgtgaatatgagagagttaaatctagacaaatgtcaatttttaacacggatacacgacgtctc 28505446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 12 - 265
Target Start/End: Original strand, 28236411 - 28236662
Alignment:
Q  12 gagatgaactcaagaagatgcaaaaccttaaaacacttattgttaagaatggtagcttttccaaaggtcctaaatattttcctgatagtattagagtatt 111  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||| ||||| ||||| | ||||||||    
T  28236411 gagatgaactcaagaagatgcaaaacctcaaaacacttattgttaagaatggtaccttttccaaaggtcctaattatcttcctaatagtttgagagtatt 28236510  T
Q  112 ggaatggcataaatatccttcacggttcgtaccgtctgatattttcccaaacaaactttctgtatgcaagctacaggaaagtgacttttcatcatatgat 211  Q
    |||||||| ||||||||||||| || || |||| |||||| | | |||||| ||||||||  ||||||| ||| ||||||||||| ||||||||| |||     
T  28236511 ggaatggcctaaatatccttcaaggatcataccatctgatttctgcccaaagaaactttcaatatgcaaactaaaggaaagtgacctttcatcatttgag 28236610  T
Q  212 ctgtgtggcacaatgaaggtatatgtgtaaatgtaatgattttttaccctcgtc 265  Q
     || |||||||| ||||||  |||||||||||||||||||||||| ||||||||    
T  28236611 ttgcgtggcacagtgaagg--tatgtgtaaatgtaatgatttttttccctcgtc 28236662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 12 - 256
Target Start/End: Complemental strand, 28296016 - 28295774
Alignment:
Q  12 gagatgaactcaagaagatgcaaaaccttaaaacacttattgttaagaatggtagcttttccaaaggtcctaaatattttcctgatagtattagagtatt 111  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||| | ||||||||    
T  28296016 gagatgagctcaagaagatgcaaaacctcaaaacacttattgttaagaatggtagcttttccaaaggtcctaaatatcttcctaacagtttgagagtatt 28295917  T
Q  112 ggaatggcataaatatccttcacggttcgtaccgtctgatattttcccaaacaaactttctgtatgcaagctacaggaaagtgacttttcatcatatgat 211  Q
    |||||||| |||||||||||||||| || |||| |||||| ||| |||||| ||||||||| |||||||||||||| |||||||||||   |||| ||      
T  28295916 ggaatggcctaaatatccttcacggatcataccatctgatttttgcccaaagaaactttctatatgcaagctacagcaaagtgactttatttcatttggg 28295817  T
Q  212 ctgtgtggcacaatgaaggtatatgtgtaaatgtaatgatttttt 256  Q
     ||  ||||||||||||||  ||||||||||||||||||||||||    
T  28295816 ttgcatggcacaatgaagg--tatgtgtaaatgtaatgatttttt 28295774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 12 - 256
Target Start/End: Original strand, 28516057 - 28516299
Alignment:
Q  12 gagatgaactcaagaagatgcaaaaccttaaaacacttattgttaagaatggtagcttttccaaaggtcctaaatattttcctgatagtattagagtatt 111  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||| | ||||||||    
T  28516057 gagatgagctcaagaagatgcaaaacctcaaaacacttattgttaagaatggtagcttttccaaaggtcctaaatatcttcctaacagtttgagagtatt 28516156  T
Q  112 ggaatggcataaatatccttcacggttcgtaccgtctgatattttcccaaacaaactttctgtatgcaagctacaggaaagtgacttttcatcatatgat 211  Q
    |||||||| |||||||||||||||| || |||| |||||| ||| |||||| ||||||||| |||||||||||||| |||||||||||   |||| ||      
T  28516157 ggaatggcctaaatatccttcacggatcataccatctgatttttgcccaaagaaactttctatatgcaagctacagcaaagtgactttatttcatttggg 28516256  T
Q  212 ctgtgtggcacaatgaaggtatatgtgtaaatgtaatgatttttt 256  Q
     ||  ||||||||||||||  ||||||||||||||||||||||||    
T  28516257 ttgcatggcacaatgaagg--tatgtgtaaatgtaatgatttttt 28516299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 12 - 256
Target Start/End: Original strand, 28187303 - 28187544
Alignment:
Q  12 gagatgaactcaagaagatgcaaaaccttaaaacacttattgttaagaatggtagcttttccaaaggtcctaaatattttcctgatagtattagagtatt 111  Q
    ||||||||||  ||||||||||||| || ||||||||||||||||||||||||| ||||||||| ||||| |||||| ||||  | ||| | ||||||||    
T  28187303 gagatgaactggagaagatgcaaaagctcaaaacacttattgttaagaatggtaccttttccaatggtccaaaatatcttccaaacagtttgagagtatt 28187402  T
Q  112 ggaatggcataaatatccttcacggttcgtaccgtctgatattttcccaaacaaactttctgtatgcaagctacaggaaagtgacttttcatcatatgat 211  Q
    ||||||||| ||||||||||||||| || |||| |||||| |||||||||| ||||||||| ||||||| |||||| ||||||||||| |||||| |||     
T  28187403 ggaatggcaaaaatatccttcacgggtcataccatctgat-ttttcccaaagaaactttctatatgcaaactacagcaaagtgactttacatcatttgag 28187501  T
Q  212 ctgtgtggcacaatgaaggtatatgtgtaaatgtaatgatttttt 256  Q
     || |||||||||||||||  ||||||||||||||||||||||||    
T  28187502 ttgcgtggcacaatgaagg--tatgtgtaaatgtaatgatttttt 28187544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 12 - 199
Target Start/End: Original strand, 28244783 - 28244970
Alignment:
Q  12 gagatgaactcaagaagatgcaaaaccttaaaacacttattgttaagaatggtagcttttccaaaggtcctaaatattttcctgatagtattagagtatt 111  Q
    |||||||||| ||||||||| ||||||| ||||||||||||||||||||||||| ||||||||| ||||| |||||| ||||  | ||| | ||||||||    
T  28244783 gagatgaactgaagaagatggaaaacctcaaaacacttattgttaagaatggtaccttttccaatggtccaaaatatcttccaaacagtctgagagtatt 28244882  T
Q  112 ggaatggcataaatatccttcacggttcgtaccgtctgatattttcccaaacaaactttctgtatgcaagctacaggaaagtgacttt 199  Q
    |||||||| |||||||||||||| | || |||| |||||| ||| |||||| ||||||||| |||||||||||||  |||||||||||    
T  28244883 ggaatggcctaaatatccttcaccggtcataccatctgatttttgcccaaagaaactttctatatgcaagctacaacaaagtgacttt 28244970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 267 - 389
Target Start/End: Original strand, 28524324 - 28524446
Alignment:
Q  267 tataagaatattcattcattcgttaattctttttcttttgccttatattttgcagatgtttgtgaatatgagagagttaaatctagacaaatgtcaattt 366  Q
    ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||| |||||||||    
T  28524324 tataagaatattcattcattcattaattctttttcttttgccgtatattttgcagaggtttgtgaatatgaaagagttaaatctagacaattgtcaattt 28524423  T
Q  367 ttaacatggatacacgacgtctc 389  Q
    |||||| ||||||| ||||||||    
T  28524424 ttaacacggatacatgacgtctc 28524446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 289 - 389
Target Start/End: Original strand, 28190504 - 28190604
Alignment:
Q  289 ttaattctttttcttttgccttatattttgcagatgtttgtgaatatgagagagttaaatctagacaaatgtcaatttttaacatggatacacgacgtct 388  Q
    ||||||| |||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||    
T  28190504 ttaattccttttctttggcctgatattttgcagaggtttgtgaatatgagagagttaaatctagacaattgtcaatttttaacacggatacatgacgtct 28190603  T
Q  389 c 389  Q
    |    
T  28190604 c 28190604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 267 - 389
Target Start/End: Original strand, 28245446 - 28245568
Alignment:
Q  267 tataagaatattcattcattcgttaattctttttcttttgccttatattttgcagatgtttgtgaatatgagagagttaaatctagacaaatgtcaattt 366  Q
    |||||||||  |||||||||| ||||||||||||| |||||| ||||||||||||| ||||| |||| | |||||||||||||||||| | ||||||| |    
T  28245446 tataagaattctcattcattcattaattctttttcatttgccgtatattttgcagaggtttgggaatgtaagagagttaaatctagacgactgtcaatat 28245545  T
Q  367 ttaacatggatacacgacgtctc 389  Q
    |||||| |||| |||||||||||    
T  28245546 ttaacacggattcacgacgtctc 28245568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 276 - 389
Target Start/End: Original strand, 28238477 - 28238590
Alignment:
Q  276 attcattcattcgttaattctttttcttttgccttatattttgcagatgtttgtgaatatgagagagttaaatctagacaaatgtcaatttttaacatgg 375  Q
    |||| ||||||  |||||| ||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||| | ||||||| |     
T  28238477 attcgttcattaattaattatttttcttttgccttatattttgcagggctttgtgaatatgagagagttaaatctagacaaatgtcagtatttaacacga 28238576  T
Q  376 atacacgacgtctc 389  Q
    || |||||||||||    
T  28238577 attcacgacgtctc 28238590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 26341768 - 26341723
Alignment:
Q  12 gagatgaactcaagaagatgcaaaaccttaaaacacttattgttaa 57  Q
    |||||||| ||||||||||| ||||||| ||||||||| |||||||    
T  26341768 gagatgaattcaagaagatgaaaaacctcaaaacacttgttgttaa 26341723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 28096713 - 28096668
Alignment:
Q  12 gagatgaactcaagaagatgcaaaaccttaaaacacttattgttaa 57  Q
    |||||||| | ||||||||| ||||||||||||||||||| |||||    
T  28096713 gagatgaattaaagaagatgaaaaaccttaaaacacttatcgttaa 28096668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 28151112 - 28151157
Alignment:
Q  12 gagatgaactcaagaagatgcaaaaccttaaaacacttattgttaa 57  Q
    |||||||| ||||||||||| ||||||| ||||||||| |||||||    
T  28151112 gagatgaattcaagaagatgaaaaacctcaaaacacttgttgttaa 28151157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 172; Significance: 3e-92; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 12 - 389
Target Start/End: Complemental strand, 56579 - 56212
Alignment:
Q  12 gagatgaactcaagaagatgcaaaaccttaaaacacttattgttaagaatggtagcttttccaaaggtcctaaatattttcctgatagtattagagtatt 111  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||||| | ||| | ||||||||    
T  56579 gagatgaactcaagaagatgcaaaacctcaaaacacttattgttaagaatggtagcttttccaaaggtcctaaacatcttcctaacagtttgagagtatt 56480  T
Q  112 ggaatggcataaatatccttcacggttcgtaccgtctgatattttcccaaacaaactttctgtatgcaagctacaggaaagtgacttttcatcatatgat 211  Q
    |||||||| |||||||||||||||||||||||| |||||||||||||| || ||||||||| ||||||| |||||| ||||||||||| ||||||  ||     
T  56479 ggaatggcgtaaatatccttcacggttcgtaccatctgatattttcccgaagaaactttctatatgcaaactacagcaaagtgactttacatcattcgag 56380  T
Q  212 ctgtgtggcacaatgaaggtatatgtgtaaatgtaatgattt-tttaccctcgtcttataagaatattcattcattcgttaattctttttcttttgcctt 310  Q
     || |||| ||||| ||||  ||||| |||||| ||||||||  || | ||| |||||         || |  | || |||||| |||||||||||||||    
T  56379 ttgcgtgggacaatcaagg--tatgtttaaatgcaatgatttcatttctctcatctta---------tcttataatcattaattatttttcttttgcctt 56291  T
Q  311 atattttgcagatgtttgtgaatatgagagagttaaatctagacaaatgtcaatttttaacatggatacacgacgtctc 389  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||| ||||    
T  56290 atattttgcagaggtttgtgaatatgagagagttaaatctagacaaatgtcaatatttaacacggatacatgacatctc 56212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 135; Significance: 3e-70; HSPs: 4)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 12 - 265
Target Start/End: Original strand, 36573 - 36824
Alignment:
Q  12 gagatgaactcaagaagatgcaaaaccttaaaacacttattgttaagaatggtagcttttccaaaggtcctaaatattttcctgatagtattagagtatt 111  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||| ||||| ||||| | ||||||||    
T  36573 gagatgaactcaagaagatgcaaaacctcaaaacacttattgttaagaatggtaccttttccaaaggtcctaattatcttcctaatagtttgagagtatt 36672  T
Q  112 ggaatggcataaatatccttcacggttcgtaccgtctgatattttcccaaacaaactttctgtatgcaagctacaggaaagtgacttttcatcatatgat 211  Q
    |||||||| ||||||||||||| || || |||| |||||| | | |||||| ||||||||  ||||||| ||| ||||||||||| ||||||||| |||     
T  36673 ggaatggcctaaatatccttcaaggatcataccatctgatttctgcccaaagaaactttcaatatgcaaactaaaggaaagtgacctttcatcatttgag 36772  T
Q  212 ctgtgtggcacaatgaaggtatatgtgtaaatgtaatgattttttaccctcgtc 265  Q
     || |||||||| ||||||  |||||||||||||||||||||||| ||||||||    
T  36773 ttgcgtggcacagtgaagg--tatgtgtaaatgtaatgatttttttccctcgtc 36824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 12 - 199
Target Start/End: Original strand, 44945 - 45132
Alignment:
Q  12 gagatgaactcaagaagatgcaaaaccttaaaacacttattgttaagaatggtagcttttccaaaggtcctaaatattttcctgatagtattagagtatt 111  Q
    |||||||||| ||||||||| ||||||| ||||||||||||||||||||||||| ||||||||| ||||| |||||| ||||  | ||| | ||||||||    
T  44945 gagatgaactgaagaagatggaaaacctcaaaacacttattgttaagaatggtaccttttccaatggtccaaaatatcttccaaacagtctgagagtatt 45044  T
Q  112 ggaatggcataaatatccttcacggttcgtaccgtctgatattttcccaaacaaactttctgtatgcaagctacaggaaagtgacttt 199  Q
    |||||||| |||||||||||||| | || |||| |||||| ||| |||||| ||||||||| |||||||||||||  |||||||||||    
T  45045 ggaatggcctaaatatccttcaccggtcataccatctgatttttgcccaaagaaactttctatatgcaagctacaacaaagtgacttt 45132  T

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Target: scaffold0038; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 267 - 389
Target Start/End: Original strand, 45608 - 45730
Alignment:
Q  267 tataagaatattcattcattcgttaattctttttcttttgccttatattttgcagatgtttgtgaatatgagagagttaaatctagacaaatgtcaattt 366  Q
    |||||||||  |||||||||| ||||||||||||| |||||| ||||||||||||| ||||| |||| | |||||||||||||||||| | ||||||| |    
T  45608 tataagaattctcattcattcattaattctttttcatttgccgtatattttgcagaggtttgggaatgtaagagagttaaatctagacgactgtcaatat 45707  T
Q  367 ttaacatggatacacgacgtctc 389  Q
    |||||| |||| |||||||||||    
T  45708 ttaacacggattcacgacgtctc 45730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 276 - 389
Target Start/End: Original strand, 38639 - 38752
Alignment:
Q  276 attcattcattcgttaattctttttcttttgccttatattttgcagatgtttgtgaatatgagagagttaaatctagacaaatgtcaatttttaacatgg 375  Q
    |||| ||||||  |||||| ||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||| | ||||||| |     
T  38639 attcgttcattaattaattatttttcttttgccttatattttgcagggctttgtgaatatgagagagttaaatctagacaaatgtcagtatttaacacga 38738  T
Q  376 atacacgacgtctc 389  Q
    || |||||||||||    
T  38739 attcacgacgtctc 38752  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 21 - 134
Target Start/End: Original strand, 16693016 - 16693129
Alignment:
Q  21 tcaagaagatgcaaaaccttaaaacacttattgttaagaatggtagcttttccaaaggtcctaaatattttcctgatagtattagagtattggaatggca 120  Q
    |||||||||||  |||||| |||||||||||| |||||||||||  |||||||||||| || ||| || ||||  ||||| | |||||  | ||||||||    
T  16693016 tcaagaagatgataaacctcaaaacacttattattaagaatggtcacttttccaaaggaccaaaacatcttccaaatagtttaagagtgcttgaatggca 16693115  T
Q  121 taaatatccttcac 134  Q
    || |||||||||||    
T  16693116 tagatatccttcac 16693129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 313 - 356
Target Start/End: Original strand, 16693294 - 16693337
Alignment:
Q  313 attttgcagatgtttgtgaatatgagagagttaaatctagacaa 356  Q
    |||||||||| ||| ||||||||||||||||||||| |||||||    
T  16693294 attttgcagaagttcgtgaatatgagagagttaaatttagacaa 16693337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 3281587 - 3281632
Alignment:
Q  12 gagatgaactcaagaagatgcaaaaccttaaaacacttattgttaa 57  Q
    |||||||| ||||||||||| ||||||| |||||||||||||||||    
T  3281587 gagatgaattcaagaagatgaaaaacctcaaaacacttattgttaa 3281632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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