View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8646_low_5 (Length: 396)

Name: NF8646_low_5
Description: NF8646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8646_low_5
NF8646_low_5
[»] chr6 (1 HSPs)
chr6 (19-349)||(28717282-28717619)
[»] chr3 (11 HSPs)
chr3 (57-132)||(22197182-22197257)
chr3 (57-132)||(22194434-22194509)
chr3 (294-332)||(22196893-22196931)
chr3 (294-332)||(22194145-22194183)
chr3 (190-254)||(22197044-22197109)
chr3 (210-254)||(22194295-22194339)
chr3 (21-51)||(13349433-13349463)
chr3 (21-55)||(23706808-23706842)
chr3 (21-55)||(23725264-23725298)
chr3 (21-55)||(23743720-23743754)
chr3 (19-51)||(20212998-20213030)
[»] scaffold0418 (1 HSPs)
scaffold0418 (23-51)||(6891-6919)
[»] chr8 (2 HSPs)
chr8 (19-51)||(9197113-9197145)
chr8 (19-51)||(17725656-17725688)
[»] chr4 (1 HSPs)
chr4 (23-51)||(40495113-40495141)


Alignment Details
Target: chr6 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 19 - 349
Target Start/End: Complemental strand, 28717619 - 28717282
Alignment:
Q  19 aggatttggtgtcaacgaatttgttgacacctgtgtctaaaagctgatgatctccattatctccacataacattaaagtttgacatatattatgttggag 118  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28717619 aggatttggtgtcaacgaattcgttgatacctgtgtctaaaagctgatgatctccattatctccacataacattaaagtttgacatatattatgttggag 28717520  T
Q  119 ggattgaccaaagttcccaaggtaatttctctgtaagaacattaaaaacaaatacattaata--------aaagaatatgtaatagttgttaccaatatt 210  Q
    | |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||    
T  28717519 gtattgaccaaagt-cccaaggtaatttctctgtaagaacattaaaaacaaatacattaatatattaataaaagaatatgtaatagttgttaccaatatt 28717421  T
Q  211 taatattttcaagcaagtatagttgacttaaccagattgtttctcgcaggcagttggctgaagaaattgacttgacgaaagtcttggactttgaatatat 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28717420 taatattttcaagcaagtatagttgacttaaccagattgtttctcgcaggcagttggctgaagaaattgacttgacgaaagtcttggactttgaatatat 28717321  T
Q  311 tcattccataataagcaaacattacctccgcgtcatatc 349  Q
    ||||||||||||||||||||||||||||  |||||||||    
T  28717320 tcattccataataagcaaacattacctctacgtcatatc 28717282  T

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Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 57 - 132
Target Start/End: Complemental strand, 22197257 - 22197182
Alignment:
Q  57 aaaagctgatgatctccattatctccacataacattaaagtttgacatatattatgttggagggattgaccaaagt 132  Q
    ||||| ||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||    
T  22197257 aaaagttgatgatcttcattatctccacataagattaaagtttgacgtatattatgttggaggtattgaccaaagt 22197182  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 57 - 132
Target Start/End: Complemental strand, 22194509 - 22194434
Alignment:
Q  57 aaaagctgatgatctccattatctccacataacattaaagtttgacatatattatgttggagggattgaccaaagt 132  Q
    ||||| |||| |||| ||||||||||||| || ||||||||||||| |||||||||||||||| ||||||||||||    
T  22194509 aaaagttgataatcttcattatctccacaaaagattaaagtttgacgtatattatgttggaggtattgaccaaagt 22194434  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 294 - 332
Target Start/End: Complemental strand, 22196931 - 22196893
Alignment:
Q  294 ttggactttgaatatattcattccataataagcaaacat 332  Q
    |||||||||||||||||||||||||||||||||||||||    
T  22196931 ttggactttgaatatattcattccataataagcaaacat 22196893  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 294 - 332
Target Start/End: Complemental strand, 22194183 - 22194145
Alignment:
Q  294 ttggactttgaatatattcattccataataagcaaacat 332  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  22194183 ttggactttgaatatattcattgcataataagcaaacat 22194145  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 190 - 254
Target Start/End: Complemental strand, 22197109 - 22197044
Alignment:
Q  190 gtaatagttgttaccaatat-ttaatattttcaagcaagtatagttgacttaaccagattgtttct 254  Q
    |||||| ||||||| || || |||||||||  |||||| |||||||||||||||||||||||||||    
T  22197109 gtaataattgttacaaaaatgttaatatttgtaagcaaatatagttgacttaaccagattgtttct 22197044  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 254
Target Start/End: Complemental strand, 22194339 - 22194295
Alignment:
Q  210 ttaatattttcaagcaagtatagttgacttaaccagattgtttct 254  Q
    |||||||||  |||||| |||||||||||||||||||||||||||    
T  22194339 ttaatatttgtaagcaaatatagttgacttaaccagattgtttct 22194295  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 51
Target Start/End: Complemental strand, 13349463 - 13349433
Alignment:
Q  21 gatttggtgtcaacgaatttgttgacacctg 51  Q
    |||||||||||||||||||||||||||||||    
T  13349463 gatttggtgtcaacgaatttgttgacacctg 13349433  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 23706808 - 23706842
Alignment:
Q  21 gatttggtgtcaacgaatttgttgacacctgtgtc 55  Q
    |||||||||||||||||| ||||||||||||||||    
T  23706808 gatttggtgtcaacgaatatgttgacacctgtgtc 23706842  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 23725264 - 23725298
Alignment:
Q  21 gatttggtgtcaacgaatttgttgacacctgtgtc 55  Q
    |||||||||||||||||| ||||||||||||||||    
T  23725264 gatttggtgtcaacgaatatgttgacacctgtgtc 23725298  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 23743720 - 23743754
Alignment:
Q  21 gatttggtgtcaacgaatttgttgacacctgtgtc 55  Q
    |||||||||||||||||| ||||||||||||||||    
T  23743720 gatttggtgtcaacgaatatgttgacacctgtgtc 23743754  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 20213030 - 20212998
Alignment:
Q  19 aggatttggtgtcaacgaatttgttgacacctg 51  Q
    ||||||||||||||||||||| |||||||||||    
T  20213030 aggatttggtgtcaacgaattcgttgacacctg 20212998  T

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Target: scaffold0418 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0418
Description:

Target: scaffold0418; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 51
Target Start/End: Original strand, 6891 - 6919
Alignment:
Q  23 tttggtgtcaacgaatttgttgacacctg 51  Q
    |||||||||||||||||||||||||||||    
T  6891 tttggtgtcaacgaatttgttgacacctg 6919  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 9197145 - 9197113
Alignment:
Q  19 aggatttggtgtcaacgaatttgttgacacctg 51  Q
    ||||||||||||||||||||| |||||||||||    
T  9197145 aggatttggtgtcaacgaattcgttgacacctg 9197113  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 17725656 - 17725688
Alignment:
Q  19 aggatttggtgtcaacgaatttgttgacacctg 51  Q
    ||||||||||||||||||||| |||||||||||    
T  17725656 aggatttggtgtcaacgaattcgttgacacctg 17725688  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 51
Target Start/End: Complemental strand, 40495141 - 40495113
Alignment:
Q  23 tttggtgtcaacgaatttgttgacacctg 51  Q
    |||||||||||||||||||||||||||||    
T  40495141 tttggtgtcaacgaatttgttgacacctg 40495113  T

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