View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8646_low_7 (Length: 276)

Name: NF8646_low_7
Description: NF8646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8646_low_7
NF8646_low_7
[»] chr5 (1 HSPs)
chr5 (1-267)||(8830268-8830533)
[»] chr1 (9 HSPs)
chr1 (107-267)||(43919005-43919163)
chr1 (171-261)||(43984624-43984714)
chr1 (171-261)||(44002632-44002722)
chr1 (169-258)||(43988882-43988970)
chr1 (175-258)||(43910375-43910458)
chr1 (7-56)||(43993039-43993088)
chr1 (8-56)||(43984470-43984518)
chr1 (100-140)||(44002555-44002595)
chr1 (100-145)||(43984554-43984599)


Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 8830268 - 8830533
Alignment:
Q  1 cctctacctctatcactttgataatgacttaaagtacaaaccaaactaatcacacacnnnnnnnntatatatataataactcaaacgaaatcgaccatga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||    
T  8830268 cctctacctctatcactttgataatgacttaaagtacaaaccaaactaatcacacacaaaaaaa-tatatatataataactcaaacgaaatcgaccatga 8830366  T
Q  101 aacgtgaaatcaacttaaacataatctcttcacttagaatataaatcaagnnnnnnnagctgcttagaaataaacttagcaaggcacatagtggtgacta 200  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||    
T  8830367 aacgtgaaatcaacttagacataatctcttcacttagaatataaatcaagtttttttagctgcttagaaataaacttagcaaggcacatagtggtgacta 8830466  T
Q  201 tggactatcatcatgtagcttgcttttaaatctttcaggaatggtgttgtagcttgatgtccatctc 267  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  8830467 tggactatcatcatgtagcttgcttttaaatctttctggaatggtgttgtagcttgatgtccttctc 8830533  T

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Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 107 - 267
Target Start/End: Complemental strand, 43919163 - 43919005
Alignment:
Q  107 aaatcaacttaaacataatctcttcacttagaatataaatcaagnnnnnnnagctgcttagaaataaacttagcaaggcacatagtggtgactatggact 206  Q
    ||||||||| ||||||||||||| |||||||||| ||||||||        |||  ||||| |||||||||||||||||||||||||||| | ||| |||    
T  43919163 aaatcaactcaaacataatctctgcacttagaatttaaatcaa-atattttagcaacttagcaataaacttagcaaggcacatagtggtggc-atgaact 43919066  T
Q  207 atcatcatgtagcttgcttttaaatctttcaggaatggtgttgtagcttgatgtccatctc 267  Q
    |||||| |||||||||||||| |||| ||||||| ||||||||||| ||||||||| ||||    
T  43919065 atcatcctgtagcttgcttttgaatccttcaggagtggtgttgtagtttgatgtccttctc 43919005  T

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Target: chr1; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 171 - 261
Target Start/End: Original strand, 43984624 - 43984714
Alignment:
Q  171 taaacttagcaaggcacatagtggtgactatggactatcatcatgtagcttgcttttaaatctttcaggaatggtgttgtagcttgatgtc 261  Q
    |||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||    
T  43984624 taaacttagcaaggtacatagtggtggttatggactatcatcatgtagcttgcttttaaatccttcaggaatggtgttgcagctttatgtc 43984714  T

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Target: chr1; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 171 - 261
Target Start/End: Original strand, 44002632 - 44002722
Alignment:
Q  171 taaacttagcaaggcacatagtggtgactatggactatcatcatgtagcttgcttttaaatctttcaggaatggtgttgtagcttgatgtc 261  Q
    |||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||    
T  44002632 taaacttagcaaggtacatagtggtggttatggactatcatcatgtagcttgcttttaaatccttcaggaatggtgttgcagctttatgtc 44002722  T

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Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 169 - 258
Target Start/End: Original strand, 43988882 - 43988970
Alignment:
Q  169 aataaacttagcaaggcacatagtggtgactatggactatcatcatgtagcttgcttttaaatctttcaggaatggtgttgtagcttgat 258  Q
    |||||||||||||||||| | ||||||  ||||||||||| |||||||||||||| ||||||||||| ||||||  ||||||||||||||    
T  43988882 aataaacttagcaaggcaaagagtggtagctatggactat-atcatgtagcttgcctttaaatcttttaggaatactgttgtagcttgat 43988970  T

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Target: chr1; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 175 - 258
Target Start/End: Complemental strand, 43910458 - 43910375
Alignment:
Q  175 cttagcaaggcacatagtggtgactatggactatcatcatgtagcttgcttttaaatctttcaggaatggtgttgtagcttgat 258  Q
    |||||||||| || |||||||| ||||| |||||| || ||| ||||||||||||||| ||||||| ||||||||||| |||||    
T  43910458 cttagcaaggaacgtagtggtggctatgaactatcctcgtgtggcttgcttttaaatccttcaggagtggtgttgtagtttgat 43910375  T

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Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 43993039 - 43993088
Alignment:
Q  7 cctctatcactttgataatgacttaaagtacaaaccaaactaatcacaca 56  Q
    ||||||| ||||||||||| ||||||||||||||||||| ||||||||||    
T  43993039 cctctattactttgataatcacttaaagtacaaaccaaattaatcacaca 43993088  T

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Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 43984470 - 43984518
Alignment:
Q  8 ctctatcactttgataatgacttaaagtacaaaccaaactaatcacaca 56  Q
    |||||||||||||||||| ||||||||||||||| ||| ||||||||||    
T  43984470 ctctatcactttgataataacttaaagtacaaacgaaattaatcacaca 43984518  T

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Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 140
Target Start/End: Original strand, 44002555 - 44002595
Alignment:
Q  100 aaacgtgaaatcaacttaaacataatctcttcacttagaat 140  Q
    |||| ||||||||||||||||||||||||||||| ||||||    
T  44002555 aaacatgaaatcaacttaaacataatctcttcacctagaat 44002595  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 100 - 145
Target Start/End: Original strand, 43984554 - 43984599
Alignment:
Q  100 aaacgtgaaatcaacttaaacataatctcttcacttagaatataaa 145  Q
    |||| ||||||||| ||||||||||||||||||| |||||| ||||    
T  43984554 aaacatgaaatcaatttaaacataatctcttcacctagaatgtaaa 43984599  T

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