View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8646_low_9 (Length: 240)
Name: NF8646_low_9
Description: NF8646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8646_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 10545634 - 10545418
Alignment:
| Q |
1 |
gtcgcggaacagagcgcgtgatggttacttactttaccgacctaaagtgtttctgttcatcagaggattagtggtgtttgttttgttttatccgaggtag |
100 |
Q |
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| T |
10545634 |
gtcgcggaacagagcgcgtgatggtcacttactttaccgacctaaagtgtttctgttcatcagaggattagtggtgtttgttttgttttatccgaggtag |
10545535 |
T |
|
| Q |
101 |
attagtggtctttgttttgttttattggagatttaatgttaaccacatcaactcaatctattactaatcactaatattttaattactatagataaaaaca |
200 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
10545534 |
attagtggtctttgttttgttttactggagatttaatgttaaccacatcaactcaatctattactaatcactaatattttaattactatacataaaaaca |
10545435 |
T |
|
| Q |
201 |
aataaaacttcacatta |
217 |
Q |
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||||||||||||||||| |
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| T |
10545434 |
aataaaacttcacatta |
10545418 |
T |
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