View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8647_high_1 (Length: 680)
Name: NF8647_high_1
Description: NF8647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8647_high_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 386; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 259 - 661
Target Start/End: Complemental strand, 44567429 - 44567025
Alignment:
| Q |
259 |
atgaagcaatgaagtactactaggaggaaggaaaaggcgtccttcaagattaacaaataaactaaataaagaacacaaa--caaataagctcaagggtgt |
356 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
44567429 |
atgaagcaatgaagtactactaggaggaaggaaaaggcgtccttcaagattaacaaataaactaaataaagaacaaaaaaacaaataagctcaagggtgt |
44567330 |
T |
|
| Q |
357 |
atcaaggtagctaatgtttctaattctgttgaacggctgttcgtcacaatatggagtaacaaaggtagatgcaaatgcaacaacagaatgataatagata |
456 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44567329 |
atcaaggtagctaatgtttctaattctgttgaacggctgttcgtcacaatatggagtaacaaaggtagatgcaaatgcaacaacagaatgataatagata |
44567230 |
T |
|
| Q |
457 |
cttaccaaatagagataatactatgagaagacacgcacccaattgaactggtctgcggcttcccatttttgtcccagcaattgtgtgaacattttcggtt |
556 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44567229 |
cttaccaaatagagataatactatgagaagacacgcacccaattgaactggtctgcggcttcccatttttgtcccagcaattgtgtgaacattttcggtt |
44567130 |
T |
|
| Q |
557 |
agagttgttgatcccattccagtaccccagagaccagccaacaaactagaaaaaccttctagaccaataccgcgacttagaaccccaggagttggaggtc |
656 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
44567129 |
agagttgttgatcccattccagtaccccagagaccagccaacaaactagaaaaaccttctagaccaataccgcgactaagaaccccaggagttggaggtc |
44567030 |
T |
|
| Q |
657 |
cagat |
661 |
Q |
| |
|
||||| |
|
|
| T |
44567029 |
cagat |
44567025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 44567687 - 44567494
Alignment:
| Q |
1 |
agtccaactataatgatatttcgagagcttccggtctcagtatagcgtagattggacaagcctaatgctgtaagcatcgcccacataatgcagaggagac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44567687 |
agtccaactataatgatatttcgagagcttccggtctcagtatagcgtagattggacaagcctaatgctgtaagcatcgcccacataatgcagaggagac |
44567588 |
T |
|
| Q |
101 |
cagcaaccatggcttcaggaattgaagcaatgaaccctccgaccttccctgttatatagtaaaagtaaagttagacatggtatatttgtgatat |
194 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
44567587 |
cagcaaccatggcttcaggaattgaagcaatgaaccctccgaccttccctgttatatagtaaaagtaaaattagacatggtatatttgtgatat |
44567494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 376 - 661
Target Start/End: Original strand, 36031439 - 36031718
Alignment:
| Q |
376 |
ctaattctgttgaacggctgttcgtcacaatatggagtaacaaaggtagatgcaaatgcaacaacagaatgataatagatacttaccaaatagagataat |
475 |
Q |
| |
|
||||||||||| ||||| | ||| |||||| ||||| | |||||||| |||||| | ||||||| ||||||||||||||||| | |||||||| |
|
|
| T |
36031439 |
ctaattctgttcaacggttattcatcacaagatggactgtcaaaggtaaatgcaagt---acaacag---gataatagatacttacccacgagagataac |
36031532 |
T |
|
| Q |
476 |
actatgagaagacacgcacccaattgaactggtctgcggcttcccatttttgtcccagcaattgtgtgaacattttcggttagagttgttgatcccattc |
575 |
Q |
| |
|
||||| |||| ||| |||||||||||||||| |||||||||||||||||| ||| |||||||||| ||||||||||| |||| ||| || ||||| ||| |
|
|
| T |
36031533 |
actatcagaatacatgcacccaattgaactgctctgcggcttcccattttagtcacagcaattgtatgaacattttcagttaaagtggtagatccagttc |
36031632 |
T |
|
| Q |
576 |
cagtaccccagagaccagccaacaaactagaaaaaccttctagaccaataccgcgacttagaaccccaggagttggaggtccagat |
661 |
Q |
| |
|
|||||||||||||||||||||| | |||||||| |||||| |||||||| |||||||| |||||||||||||||||||||| |||| |
|
|
| T |
36031633 |
cagtaccccagagaccagccaaaacactagaaagaccttccagaccaattccgcgactaagaaccccaggagttggaggtctagat |
36031718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 3 - 180
Target Start/End: Original strand, 36029121 - 36029299
Alignment:
| Q |
3 |
tccaactataatgatatttcgagagcttccggtctcagtatagcgtagattggacaagcctaatgctgtaagcatcgcccacataatgcagaggagacca |
102 |
Q |
| |
|
||||| ||| |||||||| ||||||||||| | |||| |||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||| |
|
|
| T |
36029121 |
tccaattattatgatattgcgagagcttccagcctcactatagcgtagattggacaagcccaatgctgtaagcattgcccacataaagcagaggagacca |
36029220 |
T |
|
| Q |
103 |
gcaaccatggcttcaggaattgaagcaatgaaccctccgaccttccctgtt-atatagtaaaagtaaagttagacatgg |
180 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||||| |||||||||||| |||||||||||| ||| ||| |||||| |
|
|
| T |
36029221 |
gcaaccatgactccaggaattgaagcaatgaaccctccaaccttccctgttaatatagtaaaagcaaaattaaacatgg |
36029299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 77; Significance: 2e-35; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 4 - 140
Target Start/End: Complemental strand, 20126569 - 20126433
Alignment:
| Q |
4 |
ccaactataatgatatttcgagagcttccggtctcagtatagcgtagattggacaagcctaatgctgtaagcatcgcccacataatgcagaggagaccag |
103 |
Q |
| |
|
|||||||| |||||||| ||||||||||||| |||| | ||||||||||| |||||||| | ||||| ||||| |||||||| | |||||||||||||| |
|
|
| T |
20126569 |
ccaactatgatgatattgcgagagcttccggcctcactgtagcgtagatttgacaagccccaagctgtgagcattgcccacatgaagcagaggagaccag |
20126470 |
T |
|
| Q |
104 |
caaccatggcttcaggaattgaagcaatgaaccctcc |
140 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| |
|
|
| T |
20126469 |
caaccataacttcaggaattgaagcaatgaaccctcc |
20126433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 512 - 656
Target Start/End: Complemental strand, 20124273 - 20124129
Alignment:
| Q |
512 |
cggcttcccatttttgtcccagcaattgtgtgaacattttcggttagagttgttgatcccattccagtaccccagagaccagccaacaaactagaaaaac |
611 |
Q |
| |
|
|||||||||||||| ||| | |||||||| |||||||||||||||| |||||| ||||| ||||||| ||||||||||||||||| | |||| ||| || |
|
|
| T |
20124273 |
cggcttcccattttagtcacggcaattgtatgaacattttcggttaaagttgtagatccagttccagttccccagagaccagccaagacactacaaagac |
20124174 |
T |
|
| Q |
612 |
cttctagaccaataccgcgacttagaaccccaggagttggaggtc |
656 |
Q |
| |
|
|||| | |||||| || ||||| ||||| |||||||||||||||| |
|
|
| T |
20124173 |
cttccaaaccaattcctcgactaagaactccaggagttggaggtc |
20124129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 430 - 505
Target Start/End: Original strand, 16069361 - 16069436
Alignment:
| Q |
430 |
aatgcaacaacagaatgataatagatacttaccaaatagagataatactatgagaagacacgcacccaattgaact |
505 |
Q |
| |
|
|||| ||||||| |||||||||||||||||| |||| |||||||||||| | |||||||| ||||| ||||||||| |
|
|
| T |
16069361 |
aatgaaacaacaaaatgataatagatacttagcaaagagagataatactgtcagaagacatgcacctaattgaact |
16069436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University