View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8647_high_2 (Length: 638)
Name: NF8647_high_2
Description: NF8647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8647_high_2 |
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| [»] scaffold0041 (2 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 362
Target Start/End: Original strand, 63289 - 63668
Alignment:
| Q |
1 |
cctagtgggatgacacgtgtaataaccccattgaataatggaatatgatcagggagggttaccaccgtagcacaaggcattaataga-------gctatg |
93 |
Q |
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| T |
63289 |
cctagtgggatgacacgtgtaataaccccattgaataaaggaatatgatcagggagggttaccaccgtagcacaaggcattaatagatctatcagctatg |
63388 |
T |
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| Q |
94 |
ttatg----------gggacctaaaaatgtcaaagtcaagccaatgacaatgaatacaaagtattgcatatgtagcagtctttgtcgtgttctttttcta |
183 |
Q |
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| T |
63389 |
ttatggtatggtatggggacctaaaaatgtcaaagtcaagccaatgacaatgaatacaaagtattgcatatgtagcagtctttgtcgtgttctttttcta |
63488 |
T |
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| Q |
184 |
tcctatccaacaaacgaccatgttccttcgtttgttggtaaaagatgccaagcacaaacactcctttccaaacaactttcgcacctcttatctttgtcta |
283 |
Q |
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| T |
63489 |
tcctatccaacaaacgaccatgttccttcgtttgttggtaaaagatgccaagcacaaacactcctttccaaacaactttcgcacctcttatctttgtcta |
63588 |
T |
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| Q |
284 |
aacatttttcagaaaaaggaaaac-aagaatacactcaccctagggatttgtgactgatcacaatattgctatgctacct |
362 |
Q |
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| T |
63589 |
aacatttttcagaaaaaggaaaacaaagaatacactccccctagggatttgtgactgatcacaatatggctatgctacct |
63668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #2
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 410 - 569
Target Start/End: Original strand, 63716 - 63875
Alignment:
| Q |
410 |
cgtattcggtggagaagagaagactgctttccatttcatccatcaactagttgatgcatgatcctatatctatatctagacatgaaaaggcaaagccacg |
509 |
Q |
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| T |
63716 |
cgtattcggtggagaagagaagactactttccatttcatccatcaacttgttgatgcatgatcctatatctatatctagacatgaaaaggcaaagccacg |
63815 |
T |
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| Q |
510 |
agttttgtcatctatatacctagcaaatagatccaaaataaaccaattcaatgttaatgt |
569 |
Q |
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| T |
63816 |
agttttgtcatctatatacctagcaaatagatccaaaataaaccaattcaatgttaatgt |
63875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 362
Target Start/End: Complemental strand, 40909805 - 40909426
Alignment:
| Q |
1 |
cctagtgggatgacacgtgtaataaccccattgaataatggaatatgatcagggagggttaccaccgtagcacaaggcattaataga-------gctatg |
93 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
40909805 |
cctagtgggatgacacgtgtaataaccccattgaataaaggaatatgatcagggagggttaccaccgtagcacaaggcattaatagatctatcagctatg |
40909706 |
T |
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| Q |
94 |
ttatgg----------ggacctaaaaatgtcaaagtcaagccaatgacaatgaatacaaagtattgcatatgtagcagtctttgtcgtgttctttttcta |
183 |
Q |
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| T |
40909705 |
ttatggtatggtatggggacctaaaaatgtcaaagtcaagccaatgacaatgaatacaaagtattgcatatgtagcagtctttgtcgtgttctttttcta |
40909606 |
T |
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| Q |
184 |
tcctatccaacaaacgaccatgttccttcgtttgttggtaaaagatgccaagcacaaacactcctttccaaacaactttcgcacctcttatctttgtcta |
283 |
Q |
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| T |
40909605 |
tcctatccaacaaacgaccatgttccttcgtttgttggtaaaagatgccaagcacaaacactcctttccaaacaactttcgcacctcttatctttgtcta |
40909506 |
T |
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| Q |
284 |
aacatttttcagaaaaaggaaaac-aagaatacactcaccctagggatttgtgactgatcacaatattgctatgctacct |
362 |
Q |
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| T |
40909505 |
aacatttttcagaaaaaggaaaacaaagaatacactccccctagggatttgtgactgatcacaatatggctatgctacct |
40909426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 410 - 569
Target Start/End: Complemental strand, 40909378 - 40909219
Alignment:
| Q |
410 |
cgtattcggtggagaagagaagactgctttccatttcatccatcaactagttgatgcatgatcctatatctatatctagacatgaaaaggcaaagccacg |
509 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40909378 |
cgtattcggtggagaagagaagactactttccatttcatccatcaacttgttgatgcatgatcctatatctatatctagacatgaaaaggcaaagccacg |
40909279 |
T |
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| Q |
510 |
agttttgtcatctatatacctagcaaatagatccaaaataaaccaattcaatgttaatgt |
569 |
Q |
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| T |
40909278 |
agttttgtcatctatatacctagcaaatagatccaaaataaaccaattcaatgttaatgt |
40909219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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