View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8647_high_3 (Length: 486)
Name: NF8647_high_3
Description: NF8647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8647_high_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 405; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 1 - 472
Target Start/End: Original strand, 34742602 - 34743070
Alignment:
| Q |
1 |
tcaattcctctaaagacttgcatttaaaaagggcataagaggaaactgtgagttctttctgcaaatcgacacaaagctttttgattctataacttaaaac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |
|
|
| T |
34742602 |
tcaattcctctaaagacttgcatttaaaaagggcataagaggaaactgtgagttctttctgcaaatcgacataaagctttttgattctataacttaatac |
34742701 |
T |
|
| Q |
101 |
aacagatatcagattgttaatataagaagaatcatatgttcgtgccaatgcaagagaaaaacttcggatgtcttcactactcagaagatgaagcagtacc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
34742702 |
aacagatatcagattgttaatataagaagaatcatatgttcgtgccaatgcaagagaaaaactttggatgtcttcactactcagaagatgaagcagtact |
34742801 |
T |
|
| Q |
201 |
ctatctataaagtctacaaagcannnnnnnnaccttatcttgttggaagtaaagtggtccatgtcgtcaaaatttagtcgggtgataattttccagaggg |
300 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34742802 |
ctatctataaagtctacaaagcattttttt---cttatcttgttggaagtaaagtggtccatgtcgtcaaaatttagtcgggtgataattttccagaggg |
34742898 |
T |
|
| Q |
301 |
atatccacctctttgataaaacgctggtacgaattgcttccttaatatgaagaaaagaaagaatgcaaccaataatgtggtcaggtaggttgcttatcaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34742899 |
atatccacctctttgataaaacgctggtacaaattgcttccttaatatgaagaaaagaaagaatgcaaccaataatgtggtcaggtaggttgcttatcaa |
34742998 |
T |
|
| Q |
401 |
gtcttgacctttgctggatttttgcatcttagaaagcttactcttacgtctacccaactcatcaacggaact |
472 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
34742999 |
gtcttaacctttgctggatttttgcatcttagaaagcttacgcttacgtctacccaactcatcaacagaact |
34743070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 233 - 469
Target Start/End: Original strand, 34755732 - 34755968
Alignment:
| Q |
233 |
ccttatcttgttggaagtaaagtggtccatgtcgtcaaaatttagtcgggtgataattttccagagggatatccacctctttgataaaacgctggtacga |
332 |
Q |
| |
|
|||||||||||| ||| ||| || | | |||||||||||| |||| |||||||| |||||||||| |||||||| |||||||||||||||| |||||| |
|
|
| T |
34755732 |
ccttatcttgttcaaagaaaaatgtttcgtgtcgtcaaaatctagtttggtgataaatttccagaggtatatccacttctttgataaaacgctagtacga |
34755831 |
T |
|
| Q |
333 |
attgcttccttaatatgaagaaaagaaagaatgcaaccaataatgtggtcaggtaggttgcttatcaagtcttgacctttgctggatttttgcatcttag |
432 |
Q |
| |
|
| |||||||||| || |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||| |||||| |
|
|
| T |
34755832 |
actgcttccttagtaggaagaaaaaaaagaatgtaaccaataatgtggtcaggtaggttgcttatcaagtcttgacccttgatggaattttgcctcttag |
34755931 |
T |
|
| Q |
433 |
aaagcttactcttacgtctacccaactcatcaacgga |
469 |
Q |
| |
|
|||||||| |||||||||||| | | |||||||||| |
|
|
| T |
34755932 |
aaagcttatgcttacgtctaccaatcgcatcaacgga |
34755968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 2 - 473
Target Start/End: Original strand, 34747170 - 34747635
Alignment:
| Q |
2 |
caattcctctaaagacttgcatttaaaaagggcataagaggaaactgtgagttctttctgcaaatcgacacaaagctttttgattctataacttaaaaca |
101 |
Q |
| |
|
||||||||||||||||| |||||| ||||||| || ||| ||||||| ||| || || ||||||| ||| | ||||||| ||| ||| | ||| ||| |
|
|
| T |
34747170 |
caattcctctaaagactggcattttaaaaggggatcagacgaaactgcgaggtcattttgcaaatagacgcgaagctttctgactctcagatttataacg |
34747269 |
T |
|
| Q |
102 |
acagatatcagattgttaatataagaagaatcatatgt-tcgtgccaatgcaagagaaaaacttcggatgtcttcactactcagaagatgaagcagtacc |
200 |
Q |
| |
|
| |||||| ||||||||||| ||||| ||||| | ||| | || | |||||||||||||||||||| ||||||| |||| || ||||||||| |
|
|
| T |
34747270 |
atggatatccacttgttaatataggaagagtcatacttctcg-gacattttaagagaaaaacttcggatgtgttcactattcagtcga---agcagtacc |
34747365 |
T |
|
| Q |
201 |
ctatctataaagtctacaaagcannnnnnnnaccttatcttgttggaagtaaagtggtccatgtcgtcaaaatttagtcgggtgataattttccagaggg |
300 |
Q |
| |
|
||||||| ||||||||||||||| ||||||| |||||||| | | | | ||||| ||||||| |||| ||||||| | |||| ||| |
|
|
| T |
34747366 |
ctatctacaaagtctacaaagcatgctttt---cttatctcgttggaagaacaataccctatgtcatcaaaatctagttttgtgataaatgtccataggt |
34747462 |
T |
|
| Q |
301 |
atatccacctctttgataaaacgctggtacgaattgcttccttaatatgaagaaaagaaagaatgcaaccaataatgtggtcaggtaggttgcttatcaa |
400 |
Q |
| |
|
|||||||||||||||||||||| |||||| || ||| |||||| || ||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
34747463 |
atatccacctctttgataaaacactggtagaaactgcatccttagtaggaagaaaagaaagaacgcaaccaataatgtggtcaggtaggttgcttatcaa |
34747562 |
T |
|
| Q |
401 |
gtcttgacctttgctggatttttgcatcttagaaagcttactcttacgtctacccaactcatcaacggaactg |
473 |
Q |
| |
|
|||||| || ||| ||||||||||| |||||||||||||| ||||| |||||| | | |||||||||||||| |
|
|
| T |
34747563 |
gtcttgtcccttgttggatttttgcctcttagaaagcttatgcttacatctaccaatcgcatcaacggaactg |
34747635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 152 - 418
Target Start/End: Original strand, 34751954 - 34752214
Alignment:
| Q |
152 |
aagagaaaaacttcggatgtcttcactactcagaagatgaagcagtaccctatctataaagtctacaaagcannnnnnnnaccttatcttgttggaagta |
251 |
Q |
| |
|
||||||||||||| |||||| | ||||| ||||| ||||||||||||||||| | |||||||||||||| ||||||||||| ||| | |
|
|
| T |
34751954 |
aagagaaaaactttggatgtgtgcactattcaga---tgaagcagtaccctatcaacaaagtctacaaagccttttttt---cttatcttgttcaaagaa |
34752047 |
T |
|
| Q |
252 |
aagtggtccatgtcgtcaaaatttagtcgggtgataattttccagagggatatccacctctttgataaaacgctggtacgaattgcttccttaatatgaa |
351 |
Q |
| |
|
|| |||| | |||||||||||| |||| |||||||| |||||||||| |||||||| |||||||||||||||||||||||| |||||||||| || || |
|
|
| T |
34752048 |
aaatggttcttgtcgtcaaaatctagtttggtgataaatttccagaggtatatccacttctttgataaaacgctggtacgaactgcttccttagtagaaa |
34752147 |
T |
|
| Q |
352 |
gaaaagaaagaatgcaaccaataatgtggtcaggtaggttgcttatcaagtcttgacctttgctgga |
418 |
Q |
| |
|
||||| |||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||| |
|
|
| T |
34752148 |
gaaaataaagaatgtaaccaataatgtggtctggtaggttgcttatcaagtcttgacccttgctgga |
34752214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 255 - 473
Target Start/End: Original strand, 34759851 - 34760069
Alignment:
| Q |
255 |
tggtccatgtcgtcaaaatttagtcgggtgataattttccagagggatatccacctctttgataaaacgctggtacgaattgcttccttaatatgaagaa |
354 |
Q |
| |
|
|||||||||||||||||||||||||||||| || |||||||||| ||||||||||||||||||||| | ||| || ||| |||| || ||||| |
|
|
| T |
34759851 |
tggtccatgtcgtcaaaatttagtcgggtggcaaatttccagaggtttatccacctctttgataaaacacaagtagaaactgcactcttagtagaaagaa |
34759950 |
T |
|
| Q |
355 |
aagaaagaatgcaaccaataatgtggtcaggtaggttgcttatcaagtcttgacctttgctggatttttgcatcttagaaagcttactcttacgtctacc |
454 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||||||||||||||||||| | |||||||||||| || ||| ||||||||| |||||||||||| |
|
|
| T |
34759951 |
aagaaagaatgcagccaatgatgtggtcaggtaggttgcttatcaagtcttgatccttgctggattttcgcctctaggaaagcttatgcttacgtctacc |
34760050 |
T |
|
| Q |
455 |
caactcatcaacggaactg |
473 |
Q |
| |
|
| | |||||||||||||| |
|
|
| T |
34760051 |
aatcgcatcaacggaactg |
34760069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 349 - 409
Target Start/End: Original strand, 26305698 - 26305758
Alignment:
| Q |
349 |
gaagaaaagaaagaatgcaaccaataatgtggtcaggtaggttgcttatcaagtcttgacc |
409 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| |||||||| ||||||| ||||||||| |
|
|
| T |
26305698 |
gaagaaaagaaagaatagaaccaataatgtggttaggtaggtcgcttatcttgtcttgacc |
26305758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 301 - 409
Target Start/End: Original strand, 51944693 - 51944801
Alignment:
| Q |
301 |
atatccacctctttgataaaacgctggtacgaattgcttccttaatatgaagaaaagaaagaatgcaaccaataatgtggtcaggtaggttgcttatcaa |
400 |
Q |
| |
|
|||||||||||| ||||||| | | |||||||| ||| | ||| || |||||||||||||||||| ||| |||| ||||||||||| |||||||| |
|
|
| T |
51944693 |
atatccacctctgtgataaagcaccggtacgaactgcatatttagtaggaagaaaagaaagaatgcgaccgataacaaagtcaggtaggtcgcttatcat |
51944792 |
T |
|
| Q |
401 |
gtcttgacc |
409 |
Q |
| |
|
|||||||| |
|
|
| T |
51944793 |
atcttgacc |
51944801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University