View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8647_low_3 (Length: 597)
Name: NF8647_low_3
Description: NF8647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8647_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 317 - 580
Target Start/End: Complemental strand, 39811080 - 39810817
Alignment:
| Q |
317 |
ttaatctcaaatactaaatgatcttcaacttcagtatgctaaaaactgcattcttaccgccattctaggcatgtaacgaccatgacaattgacaccacgc |
416 |
Q |
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| T |
39811080 |
ttaatctcaaatactaaatgatcttcaacttcagtatgctaaaaactgcattcttaccgccattctgggcatgtaacgaccatgacaattgacaccacgc |
39810981 |
T |
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| Q |
417 |
ctatcacgggcacgcaaaactttctcaagcttgacatcaaacccatcataaagtccccattgttcatcaatttcttgtcttgtactagtgatgacaagtt |
516 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39810980 |
ctatcacgggcacgcaaaactttttcaagcttgacatcaaacccatcataaagtccccattgttcatcaatttcttgtcttgtactagtgatgacaagtt |
39810881 |
T |
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| Q |
517 |
ctgcagcatccagggaaagctcttctgcttctatccttctcattatcttatacgttgaattgat |
580 |
Q |
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| T |
39810880 |
ctgcagcatccagggaaagctcttctgcttctatccttctcattatcttatacgttgaattgat |
39810817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 17 - 319
Target Start/End: Complemental strand, 39811430 - 39811128
Alignment:
| Q |
17 |
aatattatcactgtataagttactcacttctaaccaaattgaaggtaaagcttttggtgaagaagatccatcagcaccaccagtaagctgtgagagatcc |
116 |
Q |
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| T |
39811430 |
aatattatcactgtataagttactcacttctaaccaaattgaaggtaaagcttttggtgaagaagatccatcagcaccaccagtaagctgtgagagatcc |
39811331 |
T |
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| Q |
117 |
ccatcgacttcagggccatcttcttgtatcaccacattgctaaagtccataccaggagggataacctgcagaaattccatttaagacatggtattgttta |
216 |
Q |
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| T |
39811330 |
ccatcaacttcagggccatcttcttgtatcaccacattgctaaagtccataccaggagggataacctgcagaaattccatttaagacatggtattgttca |
39811231 |
T |
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| Q |
217 |
cataaaaccatcaaagagataactgatatatgctatgcaannnnnnnnnnnnnccaataataagtttgaagacctgaaatactctgaattaattgacatg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||||||||||||||||| ||| |
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| T |
39811230 |
cataaaaccatcaaagagataactgatatatgctatgcaatttttacttttttccaatattaagtttgaagacctaaaatactctgaattaattgatatg |
39811131 |
T |
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| Q |
317 |
tta |
319 |
Q |
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||| |
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| T |
39811130 |
tta |
39811128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 123; Significance: 7e-63; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 370 - 580
Target Start/End: Complemental strand, 15798398 - 15798188
Alignment:
| Q |
370 |
ttaccgccattctaggcatgtaacgaccatgacaattgacaccacgcctatcacgggcacgcaaaactttctcaagcttgacatcaaacccatcataaag |
469 |
Q |
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|||||||||| || |||||||| ||||||||||||||||||||||| || | || |||||||| |||||||||||||||||||| || ||||||||||| |
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| T |
15798398 |
ttaccgccatccttggcatgtatcgaccatgacaattgacaccacgtctggctcgagcacgcaatactttctcaagcttgacatcgaatccatcataaag |
15798299 |
T |
|
| Q |
470 |
tccccattgttcatcaatttcttgtcttgtactagtgatgacaagttctgcagcatccagggaaagctcttctgcttctatccttctcattatcttatac |
569 |
Q |
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|||||| || || |||||||||||| |||||||||| || ||||||||||||||||| |||||||| ||||||||||||||||| ||||| ||||||||| |
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| T |
15798298 |
tccccactgctcctcaatttcttgttttgtactagtaataacaagttctgcagcatcaagggaaagttcttctgcttctatcctcctcatcatcttatac |
15798199 |
T |
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| Q |
570 |
gttgaattgat |
580 |
Q |
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|||||||||| |
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| T |
15798198 |
attgaattgat |
15798188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 34 - 184
Target Start/End: Complemental strand, 15798893 - 15798743
Alignment:
| Q |
34 |
agttactcacttctaaccaaattgaaggtaaagcttttggtgaagaagatccatcagcaccaccagtaagctgtgagagatccccatcgacttcagggcc |
133 |
Q |
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||||||| |||||| ||||||||| ||| | |||||||||||||| | | || |||||||||||||||| | || || ||||| || ||||| | |
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| T |
15798893 |
agttacttacttctgaccaaattggaggcactgcttttggtgaagacccttcgacaccaccaccagtaagctgagcaagctctccatcaacatcaggaca |
15798794 |
T |
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| Q |
134 |
atcttcttgtatcaccacattgctaaagtccataccaggagggataacctg |
184 |
Q |
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||||||||||||||| ||||||||||||||||||||||| ||||||||||| |
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| T |
15798793 |
atcttcttgtatcacaacattgctaaagtccataccaggtgggataacctg |
15798743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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