View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8647_low_5 (Length: 349)
Name: NF8647_low_5
Description: NF8647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8647_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 13 - 332
Target Start/End: Complemental strand, 45307765 - 45307450
Alignment:
| Q |
13 |
catcaacacttctttgcactttcttcttcactgtgcagcttggagcaaatgagcatttgaagtatgctcttggagatggattatcccttgtcaccttttg |
112 |
Q |
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| T |
45307765 |
catcaacacttctttgcactttcttcttcactgtgcagcttggagcaaatgagcatttgaagtatgctcttggagatggattatcccttgtcaccttttg |
45307666 |
T |
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| Q |
113 |
tccatattttctccactgatatccatctttcacaatctgaaaattaattaacacaaaaaatgtcaaacaaaaatcacttatatatattgttggctttgca |
212 |
Q |
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| T |
45307665 |
tccatattttctccactgatatccatctttcacaatctgaaaattaattaacacaaaaaatgtcaaacaaaaatcactt----atattgttggctttgca |
45307570 |
T |
|
| Q |
213 |
aattaatgaagaggaatgaatattcttacaaggcttgaatcagatgattctgtcttgaaataaactcttgaaactttagccttaatgcaagtttctacta |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45307569 |
aattaatgaagaggaatgaatattcttacaaggcttgaatcagatgattctgtcttgaaataaactcttgaaactttagccttaatgcaagtttctacta |
45307470 |
T |
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| Q |
313 |
tttgccttggtttcctgcat |
332 |
Q |
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| T |
45307469 |
tttgccttggtttcttgcat |
45307450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 47 - 155
Target Start/End: Complemental strand, 928419 - 928311
Alignment:
| Q |
47 |
gcagcttggagcaaatgagcatttgaagtatgctcttggagatggattatcccttgtcaccttttgtccatattttctccactgatatccatctttcaca |
146 |
Q |
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| T |
928419 |
gcagcttggagcaaaagagcatttgaaataagctcttggacaagggttatctctggtcactttttgtccatatttcctccaatggtatccatccttcaca |
928320 |
T |
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| Q |
147 |
atctgaaaa |
155 |
Q |
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| T |
928319 |
atctgaaaa |
928311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 146
Target Start/End: Original strand, 48925860 - 48925973
Alignment:
| Q |
33 |
ttcttcttcactgtgcagcttggagcaaatgagcatttgaagtatgctcttggagatggattatcccttgtcaccttttgtccatattttctccactgat |
132 |
Q |
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||||||||||| | ||||| |||||||| || || |||||||| || || ||||| || ||||| || || || || || ||||||||||||||||||| |
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| T |
48925860 |
ttcttcttcacagggcagccaggagcaaaggaacacttgaagtaagccctaggagaggggttatctctagtgactttctgaccatattttctccactgat |
48925959 |
T |
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| Q |
133 |
atccatctttcaca |
146 |
Q |
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||||||| |||||| |
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| T |
48925960 |
atccatccttcaca |
48925973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 139
Target Start/End: Original strand, 3258972 - 3259078
Alignment:
| Q |
33 |
ttcttcttcactgtgcagcttggagcaaatgagcatttgaagtatgctcttggagatggattatcccttgtcaccttttgtccatattttctccactgat |
132 |
Q |
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||||| || |||| ||||||||||||| ||||||| | || || ||||| ||||| || ||||| || || ||||| || |||||||| ||||| |||| |
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| T |
3258972 |
ttctttttaactgggcagcttggagcatatgagcacctaaaataagctctaggagaggggttatctctagtaaccttctgaccatatttcctccattgat |
3259071 |
T |
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| Q |
133 |
atccatc |
139 |
Q |
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||||||| |
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| T |
3259072 |
atccatc |
3259078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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