View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8647_low_7 (Length: 304)
Name: NF8647_low_7
Description: NF8647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8647_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 169; Significance: 1e-90; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 5 - 189
Target Start/End: Complemental strand, 53493172 - 53492989
Alignment:
| Q |
5 |
gcagtggaaatatgggagactttgcaagtatgcttctcaatgatttgaatgcatttatgtatattgtaattattttatactcttgattagctagctatag |
104 |
Q |
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| T |
53493172 |
gcagtggaaatatgggagactttgcaagtatgtttctcaatgatttgaatgcatttatgtatattgtacttattttatactcttgattagctagctatag |
53493073 |
T |
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| Q |
105 |
agttgatgcaaaataaataaaatttctagttatttccaattggtgatgtttttgtttttggtgaaactacgctttcttcatacat |
189 |
Q |
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| T |
53493072 |
agttgatgcaaaataaataaaatttctagttatttccaattggtgatgtttttgtttttggtgaaactacgc-ttcttcatacat |
53492989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 4 - 178
Target Start/End: Complemental strand, 16072330 - 16072156
Alignment:
| Q |
4 |
tgcagtggaaatatgggagactttgcaagtatgcttctcaatgatttgaatgcatttatgtatattgtaattattttatactcttgattagctagctata |
103 |
Q |
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| T |
16072330 |
tgcagtagagatatgggagactttgcaagtatgtttctcaacgatttgaatgcatttatatatattgtacttattttatactcttgattagctagctatg |
16072231 |
T |
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| Q |
104 |
gagttgatgcaaaataaataaaatttctagttatttccaattggtgatgtttttgtttttggtgaaactacgctt |
178 |
Q |
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| T |
16072230 |
gagttgatgcagaataaataaaatttatgattctttccaaatggtgatgttttagtttttggtaaaactacgctt |
16072156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 203 - 289
Target Start/End: Complemental strand, 53492941 - 53492855
Alignment:
| Q |
203 |
gctgagagttgctttcatatctcaaacaaatgtgcaggcnnnnnnngattcagaaataaataaaatgaatgttgagaactgctactt |
289 |
Q |
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| T |
53492941 |
gctgagagttgctttcatatctcaaacaaatgtgcaggctttttttgattcagaaataaagaaaatgaatgttgagaactgctactt |
53492855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 203 - 289
Target Start/End: Complemental strand, 53500892 - 53500806
Alignment:
| Q |
203 |
gctgagagttgctttcatatctcaaacaaatgtgcaggcnnnnnnngattcagaaataaataaaatgaatgttgagaactgctactt |
289 |
Q |
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| T |
53500892 |
gctgagagttgctttcatatttcaaacaaatgtgcaggctttttttgattcagaaataaagaaaatgaatgttgagaactgctactt |
53500806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 203 - 289
Target Start/End: Complemental strand, 16072095 - 16072009
Alignment:
| Q |
203 |
gctgagagttgctttcatatctcaaacaaatgtgcaggcnnnnnnngattcagaaataaataaaatgaatgttgagaactgctactt |
289 |
Q |
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| T |
16072095 |
gctgagagttgctttcatatctcaaacaaatgtgcaggctttttttaatccagagataaagaaaatgaatgttgagagctgctactt |
16072009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 5 - 56
Target Start/End: Complemental strand, 53500973 - 53500922
Alignment:
| Q |
5 |
gcagtggaaatatgggagactttgcaagtatgcttctcaatgatttgaatgc |
56 |
Q |
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| T |
53500973 |
gcagtggaaatatgggagactttgcaagtatgtttctcaacgatttgaatgc |
53500922 |
T |
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