View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8647_low_8 (Length: 265)
Name: NF8647_low_8
Description: NF8647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8647_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 15 - 247
Target Start/End: Original strand, 39795092 - 39795324
Alignment:
| Q |
15 |
cagagagtatcctaaaaacaacagtatccatgaatgtcgtttgaagatgatcaagtcgtttccacctaaacgcagagaatctccatggccaaatttcttt |
114 |
Q |
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| T |
39795092 |
cagagagtatcctaaaaacaacggtatccatgaatgtcgtttgaagatgatcaagtcgtttccacctaaacgcagagaatctccatggccaaatttcttt |
39795191 |
T |
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| Q |
115 |
cttcactttcttcaaccataacatgctactcttctttcccatcaaacgctttctcaaactactctttctaatatcttttgtttggtcttccatggaatat |
214 |
Q |
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| T |
39795192 |
cttcactttcttcaaccataacatgctactcttctttcccatcaaacgctttctcaaactactctttctaatatcttttgtttggtcttccatggaatat |
39795291 |
T |
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| Q |
215 |
ttggatatatgaaattgttatgtgaggtagata |
247 |
Q |
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| T |
39795292 |
ttggatatatgaaattgttatgtgaggtagata |
39795324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 109
Target Start/End: Original strand, 39774121 - 39774204
Alignment:
| Q |
23 |
atcctaaaaacaacagtatccatgaatgtcgtttgaagatgatcaagtcgtttccacctaaacgcagagaatctccatggccaaatt |
109 |
Q |
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| T |
39774121 |
atcctaaaaatgacagtatttataaatgtcgtttgaatatgatcaagtc---tcaacctaaatgcagagaatctccaaggccaaatt |
39774204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 75
Target Start/End: Original strand, 39791412 - 39791463
Alignment:
| Q |
25 |
cctaaaaacaacagtatccatgaatg-tcgtttgaagatgatcaagtcgttt |
75 |
Q |
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| T |
39791412 |
cctaaaaacgacagtatccatgaatgattgtttgaagatgatcaagtcgttt |
39791463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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