View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8647_low_9 (Length: 254)
Name: NF8647_low_9
Description: NF8647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8647_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 2466880 - 2466656
Alignment:
| Q |
18 |
gtttctgcaaagaaaacttatgtatcgagttagacataattatttaaccaactttcagttctttcttttacttgctgcaatattttgttttgtatatgcc |
117 |
Q |
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| T |
2466880 |
gtttctgcaaagaaaacttatgtatcgagttagacataattatttaaccaactttcagttctttcttttacttgctgcaatattttgttttgtatatgcc |
2466781 |
T |
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| Q |
118 |
ccattctttttatgaatattagatttgtaagctttaaatgaataggccttctgtggacattctttttgtccagctgcaaaaattaattccaacatttttt |
217 |
Q |
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| T |
2466780 |
ccattctttttatgaatattagatttgtaagctttaaatgaataggccttctgtggacattctttttgtccagcagcaaaaattaattccaacatttttt |
2466681 |
T |
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| Q |
218 |
ctaacgacgtcaacttccacaggtt |
242 |
Q |
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| T |
2466680 |
ctaacgacgtcaacttccacaggtt |
2466656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 35 - 112
Target Start/End: Original strand, 5107092 - 5107169
Alignment:
| Q |
35 |
ttatgtatcgagttagacataattatttaaccaactttcagttctttcttttacttgctgcaatattttgttttgtat |
112 |
Q |
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| T |
5107092 |
ttatatattgagttagacatatttatttatccagctttcagttctttcttttactttctgcaatgttttgttttgtat |
5107169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 31 - 112
Target Start/End: Original strand, 5103056 - 5103136
Alignment:
| Q |
31 |
aaacttatgtatcgagttagacataattatttaaccaactttcagttctttcttttacttgctgcaatattttgttttgtat |
112 |
Q |
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| T |
5103056 |
aaacttatatattgagttagacataactatttatccaaatttcagtt-tttattttacttgctgcaatgttttgttttgtat |
5103136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 38 - 111
Target Start/End: Complemental strand, 2485655 - 2485583
Alignment:
| Q |
38 |
tgtatcgagttagacataattatttaaccaactttcagttctttcttttacttgctgcaatattttgttttgta |
111 |
Q |
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| T |
2485655 |
tgtattgagttagacataatgatttatccaactcccagtt-ttccttttactagctgcaatgttttcttttgta |
2485583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 111
Target Start/End: Complemental strand, 2462854 - 2462783
Alignment:
| Q |
39 |
gtatcgagttagacataattatttaaccaactttcagttctttcttttacttgctgcaatattttgttttgta |
111 |
Q |
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| T |
2462854 |
gtattgagttagacataatgatttatccaactcccagtt-ttccttttactagctgcaatgttttcttttgta |
2462783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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