View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8648_high_6 (Length: 313)

Name: NF8648_high_6
Description: NF8648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8648_high_6
NF8648_high_6
[»] chr8 (2 HSPs)
chr8 (20-161)||(26951428-26951569)
chr8 (20-95)||(21276442-21276517)
[»] chr5 (6 HSPs)
chr5 (20-161)||(30304803-30304944)
chr5 (20-161)||(24275224-24275365)
chr5 (20-161)||(24386848-24386989)
chr5 (20-157)||(24870412-24870549)
chr5 (20-129)||(8703514-8703623)
chr5 (71-116)||(32620630-32620675)
[»] chr2 (3 HSPs)
chr2 (20-161)||(28589940-28590081)
chr2 (20-157)||(41315857-41315994)
chr2 (20-161)||(10977739-10977880)
[»] chr3 (8 HSPs)
chr3 (20-161)||(26730859-26731000)
chr3 (20-161)||(47703723-47703864)
chr3 (20-161)||(1017614-1017755)
chr3 (32-123)||(10346509-10346600)
chr3 (62-161)||(20223176-20223274)
chr3 (20-82)||(4525498-4525560)
chr3 (43-115)||(20916414-20916486)
chr3 (43-115)||(20925376-20925448)
[»] scaffold0010 (2 HSPs)
scaffold0010 (20-161)||(255354-255495)
scaffold0010 (162-303)||(255089-255248)
[»] chr7 (5 HSPs)
chr7 (20-161)||(17852326-17852467)
chr7 (20-161)||(12129473-12129614)
chr7 (20-161)||(9451442-9451583)
chr7 (32-135)||(20492474-20492577)
chr7 (38-98)||(12980730-12980790)
[»] chr4 (8 HSPs)
chr4 (20-161)||(23059329-23059470)
chr4 (20-161)||(16889124-16889264)
chr4 (20-161)||(37856958-37857099)
chr4 (32-130)||(35096902-35097000)
chr4 (43-137)||(46078465-46078557)
chr4 (32-135)||(9633052-9633155)
chr4 (38-161)||(17283510-17283632)
chr4 (38-116)||(6969609-6969687)
[»] chr6 (4 HSPs)
chr6 (22-157)||(11657618-11657753)
chr6 (20-161)||(13104357-13104499)
chr6 (20-161)||(32899885-32900026)
chr6 (20-161)||(27862077-27862209)
[»] chr1 (7 HSPs)
chr1 (20-161)||(27877683-27877824)
chr1 (20-161)||(10395346-10395487)
chr1 (20-162)||(17321857-17321999)
chr1 (20-157)||(12539098-12539235)
chr1 (41-161)||(40609930-40610050)
chr1 (32-153)||(2114350-2114471)
chr1 (32-135)||(3601235-3601338)
[»] scaffold0151 (1 HSPs)
scaffold0151 (37-161)||(21339-21462)


Alignment Details
Target: chr8 (Bit Score: 134; Significance: 9e-70; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 20 - 161
Target Start/End: Complemental strand, 26951569 - 26951428
Alignment:
Q  20 gtaaacagctgctagttgatagatttcagaactctcatgttgagttcagccggaggcaagcaaatagggtagctcacgagttaactcaggcagccctatc 119  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  26951569 gtaaacaactgctagttgatagatttcagaactctcatgttgagttcagccggaggcaagcaaatagggtagctcacgagttagctcaggcagccctatc 26951470  T
Q  120 taatcctagcccccatgtgattgatgatatacctacatgtat 161  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  26951469 taatcctagcccccatgtgattgatgatatacctacatgtat 26951428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 20 - 95
Target Start/End: Complemental strand, 21276517 - 21276442
Alignment:
Q  20 gtaaacagctgctagttgatagatttcagaactctcatgttgagttcagccggaggcaagcaaatagggtagctca 95  Q
    ||||||||||| |||| ||||||||||| |||||||||||||||||||||  |||||||||||||||| |||||||    
T  21276517 gtaaacagctgttagtagatagatttcaaaactctcatgttgagttcagcaagaggcaagcaaataggatagctca 21276442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 134; Significance: 9e-70; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 20 - 161
Target Start/End: Original strand, 30304803 - 30304944
Alignment:
Q  20 gtaaacagctgctagttgatagatttcagaactctcatgttgagttcagccggaggcaagcaaatagggtagctcacgagttaactcaggcagccctatc 119  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  30304803 gtaaacagctgctagttgatagttttcagaactctcatgttgagttcagccggaggcaagcaaatagggtagctcacgagttagctcaggcagccctatc 30304902  T
Q  120 taatcctagcccccatgtgattgatgatatacctacatgtat 161  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  30304903 taatcctagcccccatgtgattgatgatatacctacatgtat 30304944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 20 - 161
Target Start/End: Original strand, 24275224 - 24275365
Alignment:
Q  20 gtaaacagctgctagttgatagatttcagaactctcatgttgagttcagccggaggcaagcaaatagggtagctcacgagttaactcaggcagccctatc 119  Q
    ||||||| ||||||||||||| |||||||||| |||||||||||||||| || ||||||||||||| |||||||||||||||| |||||||| |||||||    
T  24275224 gtaaacaactgctagttgataaatttcagaacactcatgttgagttcagtcgaaggcaagcaaataaggtagctcacgagttagctcaggcatccctatc 24275323  T
Q  120 taatcctagcccccatgtgattgatgatatacctacatgtat 161  Q
    |||||||||||||||||||||||||||| ||| |||||||||    
T  24275324 taatcctagcccccatgtgattgatgatgtacttacatgtat 24275365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 20 - 161
Target Start/End: Complemental strand, 24386989 - 24386848
Alignment:
Q  20 gtaaacagctgctagttgatagatttcagaactctcatgttgagttcagccggaggcaagcaaatagggtagctcacgagttaactcaggcagccctatc 119  Q
    ||||||| ||||||||||||| |||||||||| |||||||||||||||| || ||||||||||||| |||||||||||||||| |||||||| |||||||    
T  24386989 gtaaacaactgctagttgataaatttcagaacactcatgttgagttcagtcgaaggcaagcaaataaggtagctcacgagttagctcaggcatccctatc 24386890  T
Q  120 taatcctagcccccatgtgattgatgatatacctacatgtat 161  Q
    |||||||||||||||||||||||||||| ||| |||||||||    
T  24386889 taatcctagcccccatgtgattgatgatgtacttacatgtat 24386848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 20 - 157
Target Start/End: Original strand, 24870412 - 24870549
Alignment:
Q  20 gtaaacagctgctagttgatagatttcagaactctcatgttgagttcagccggaggcaagcaaatagggtagctcacgagttaactcaggcagccctatc 119  Q
    |||||||||||||||| |||||||||||||||||||| |||||||||| | | |||||| |||||||| |||| ||||||||| |||| |||||||| ||    
T  24870412 gtaaacagctgctagtagatagatttcagaactctcaagttgagttcaacagaaggcaaacaaataggatagcacacgagttagctcaagcagccctgtc 24870511  T
Q  120 taatcctagcccccatgtgattgatgatatacctacat 157  Q
    ||| |||| || |||| | ||||||||| |||||||||    
T  24870512 taaccctaacctccatattattgatgatgtacctacat 24870549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 129
Target Start/End: Complemental strand, 8703623 - 8703514
Alignment:
Q  20 gtaaacagctgctagttgatagatttcagaactctcatgttgagttcagccggaggcaagcaaatagggtagctcacgagttaactcaggcagccctatc 119  Q
    |||||||| || ||||  ||||||||| |||||||||||||| ||||| |  ||||||||| |||||||||||| ||| ||||  ||||||| |||||||    
T  8703623 gtaaacagttgatagtgaatagatttcggaactctcatgttgtgttcaacacgaggcaagcgaatagggtagcttacgggttagatcaggcaaccctatc 8703524  T
Q  120 taatcctagc 129  Q
    |||| |||||    
T  8703523 taattctagc 8703514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 116
Target Start/End: Original strand, 32620630 - 32620675
Alignment:
Q  71 ggaggcaagcaaatagggtagctcacgagttaactcaggcagccct 116  Q
    ||||||||||||||||||| |||||||||||| |||| || |||||    
T  32620630 ggaggcaagcaaatagggttgctcacgagttagctcacgcggccct 32620675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 134; Significance: 9e-70; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 20 - 161
Target Start/End: Complemental strand, 28590081 - 28589940
Alignment:
Q  20 gtaaacagctgctagttgatagatttcagaactctcatgttgagttcagccggaggcaagcaaatagggtagctcacgagttaactcaggcagccctatc 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  28590081 gtaaacagctgctagttgatagatttcagaactctcatgttgagttcagccggaggcaagcaaatagggtagctcacgagttagctcaggcagccctatc 28589982  T
Q  120 taatcctagcccccatgtgattgatgatatacctacatgtat 161  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  28589981 taatcctagcccccatgtgattgatgatatacctaaatgtat 28589940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 20 - 157
Target Start/End: Complemental strand, 41315994 - 41315857
Alignment:
Q  20 gtaaacagctgctagttgatagatttcagaactctcatgttgagttcagccggaggcaagcaaatagggtagctcacgagttaactcaggcagccctatc 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  41315994 gtaaacagctgctagttgatagatttcagaactctcatgttgagttcagccggaggcaagcaaatagggtagctcacgagttaactcaggcaaccctatc 41315895  T
Q  120 taatcctagcccccatgtgattgatgatatacctacat 157  Q
    |||| |||||||||||||||||||||||||||||||||    
T  41315894 taatactagcccccatgtgattgatgatatacctacat 41315857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 20 - 161
Target Start/End: Original strand, 10977739 - 10977880
Alignment:
Q  20 gtaaacagctgctagttgatagatttcagaactctcatgttgagttcagccggaggcaagcaaatagggtagctcacgagttaactcaggcagccctatc 119  Q
    ||||||| |||||||   ||||||| |||||||||||||||||||||| |  |||||||| |||||||||||| || ||| || |||||| |||||| ||    
T  10977739 gtaaacaactgctagagaatagattccagaactctcatgttgagttcaacatgaggcaagtaaatagggtagcccatgagctagctcaggtagccctgtc 10977838  T
Q  120 taatcctagcccccatgtgattgatgatatacctacatgtat 161  Q
    |||||||||||||||| | |||||||||||||||||||||||    
T  10977839 taatcctagcccccatattattgatgatatacctacatgtat 10977880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 20 - 161
Target Start/End: Complemental strand, 26731000 - 26730859
Alignment:
Q  20 gtaaacagctgctagttgatagatttcagaactctcatgttgagttcagccggaggcaagcaaatagggtagctcacgagttaactcaggcagccctatc 119  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  26731000 gtaaacagctactagttgatagatttcagaactctcatgttgagttcagccggaggcaagcaaatagggtagcacacgagttagctcaggcagccctatc 26730901  T
Q  120 taatcctagcccccatgtgattgatgatatacctacatgtat 161  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  26730900 taatcctagcccccatgtgattgatgatatacctacatgtat 26730859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 20 - 161
Target Start/End: Complemental strand, 47703864 - 47703723
Alignment:
Q  20 gtaaacagctgctagttgatagatttcagaactctcatgttgagttcagccggaggcaagcaaatagggtagctcacgagttaactcaggcagccctatc 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||| |||||||||||||||     
T  47703864 gtaaacagctgctagttgatagatttcagaactctcatgttgagttatgccggaggcaagcaaatagggtagctcacgagttagctcaggcagccctata 47703765  T
Q  120 taatcctagcccccatgtgattgatgatatacctacatgtat 161  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  47703764 taatcctagcccccatgtgattgatgatatacctacatgtat 47703723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 20 - 161
Target Start/End: Complemental strand, 1017755 - 1017614
Alignment:
Q  20 gtaaacagctgctagttgatagatttcagaactctcatgttgagttcagccggaggcaagcaaatagggtagctcacgagttaactcaggcagccctatc 119  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  1017755 gtaaacatatgctagttgatagatttcagaactctcatgttgagttcaaccggaggcaagcaaatagggtagctcacgagttagctcagacagccctatc 1017656  T
Q  120 taatcctagcccccatgtgattgatgatatacctacatgtat 161  Q
    |||||||||||||||||||||||||||| |||||||||||||    
T  1017655 taatcctagcccccatgtgattgatgatgtacctacatgtat 1017614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 32 - 123
Target Start/End: Complemental strand, 10346600 - 10346509
Alignment:
Q  32 tagttgatagatttcagaactctcatgttgagttcagccggaggcaagcaaatagggtagctcacgagttaactcaggcagccctatctaat 123  Q
    |||| ||||||||||||||||| ||||| ||||||| | |||||||||| |||||||| |||||||||||| |||||||| |||||| ||||    
T  10346600 tagtggatagatttcagaactcgcatgtagagttcaacaggaggcaagcgaatagggtcgctcacgagttagctcaggcaaccctatataat 10346509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 62 - 161
Target Start/End: Original strand, 20223176 - 20223274
Alignment:
Q  62 agttcagccggaggcaagcaaatagggtagctcacgagttaactcaggcagccctatctaatcctagcccccatgtgattgatgatatacctacatgtat 161  Q
    |||||||| | ||||||||||||||| |||||||||||||| || ||| |||||| ||||||||||  |||||||| ||||||||| |||||||||||||    
T  20223176 agttcagcagaaggcaagcaaataggatagctcacgagttagctaaggtagccctgtctaatccta-accccatgttattgatgatgtacctacatgtat 20223274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 4525560 - 4525498
Alignment:
Q  20 gtaaacagctgctagttgatagatttcagaactctcatgttgagttcagccggaggcaagcaa 82  Q
    ||||||||||| |||| |||| ||||||||||||||||||||||||||||  |||||||||||    
T  4525560 gtaaacagctgttagtagataaatttcagaactctcatgttgagttcagcaagaggcaagcaa 4525498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 115
Target Start/End: Original strand, 20916414 - 20916486
Alignment:
Q  43 tttcagaactctcatgttgagttcagccggaggcaagcaaatagggtagctcacgagttaactcaggcagccc 115  Q
    |||||||||||| ||||||||||||   |||||||||| |||  ||| |||| ||||||| |||| |||||||    
T  20916414 tttcagaactcttatgttgagttcaataggaggcaagcgaatgaggtcgctcccgagttagctcatgcagccc 20916486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 115
Target Start/End: Original strand, 20925376 - 20925448
Alignment:
Q  43 tttcagaactctcatgttgagttcagccggaggcaagcaaatagggtagctcacgagttaactcaggcagccc 115  Q
    |||||||||||| ||||||||||||   |||||||||| |||  ||| |||| ||||||| |||| |||||||    
T  20925376 tttcagaactcttatgttgagttcaataggaggcaagcgaatgaggtcgctcccgagttagctcatgcagccc 20925448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 126; Significance: 6e-65; HSPs: 2)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 20 - 161
Target Start/End: Complemental strand, 255495 - 255354
Alignment:
Q  20 gtaaacagctgctagttgatagatttcagaactctcatgttgagttcagccggaggcaagcaaatagggtagctcacgagttaactcaggcagccctatc 119  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||    
T  255495 gtaaacagctgctagttgatagatttcagaattctcatgttgagttcagccggaggcaagcaaatagggtagctcacgggttagctcaggcagccctatc 255396  T
Q  120 taatcctagcccccatgtgattgatgatatacctacatgtat 161  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  255395 taatcctagcccccatatgattgatgatatacctacatgtat 255354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 162 - 303
Target Start/End: Complemental strand, 255248 - 255089
Alignment:
Q  162 gaaaagcaattttcttcaacctattcatctttcacattgccacgcacgatc------------------aaggccatatggaataaagtattagacttat 243  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||                  |||||||||||||||||||||||||||||||    
T  255248 gaaaagcaattttcttcaacctattcatctttcacattgccacgcacgatcttatctttcacattgtgcaaggccatatggaataaagtattagacttat 255149  T
Q  244 ttgaaattactggtgtctctgtaaccttttcaacaacaacatgttgtatatttttctctg 303  Q
    ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||    
T  255148 ttgaaattactagtatctctgtaaccttttcaacaacaacatgttgtatatttttctctg 255089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 126; Significance: 6e-65; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 20 - 161
Target Start/End: Original strand, 17852326 - 17852467
Alignment:
Q  20 gtaaacagctgctagttgatagatttcagaactctcatgttgagttcagccggaggcaagcaaatagggtagctcacgagttaactcaggcagccctatc 119  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  17852326 gtaaacagctgctagttgatagatttcagaattctcatgttgagttcagccggaggcaagcaaatagggtagctcacgagttagctcaggcagccctatc 17852425  T
Q  120 taatcctagcccccatgtgattgatgatatacctacatgtat 161  Q
    ||||| |||||||||||||||||||||| |||||||||||||    
T  17852426 taatcttagcccccatgtgattgatgatgtacctacatgtat 17852467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 20 - 161
Target Start/End: Original strand, 12129473 - 12129614
Alignment:
Q  20 gtaaacagctgctagttgatagatttcagaactctcatgttgagttcagccggaggcaagcaaatagggtagctcacgagttaactcaggcagccctatc 119  Q
    ||||||| |||||||||||||||||||| |||| ||| |||||||||||||| |||||||||||||||||||||||||||||| |||||| |||| ||||    
T  12129473 gtaaacaactgctagttgatagatttcaaaactttcacgttgagttcagccgaaggcaagcaaatagggtagctcacgagttagctcaggtagccttatc 12129572  T
Q  120 taatcctagcccccatgtgattgatgatatacctacatgtat 161  Q
    | |||||||||||||||||||||||||| |||||||||||||    
T  12129573 tgatcctagcccccatgtgattgatgatgtacctacatgtat 12129614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 20 - 161
Target Start/End: Original strand, 9451442 - 9451583
Alignment:
Q  20 gtaaacagctgctagttgatagatttcagaactctcatgttgagttcagccggaggcaagcaaatagggtagctcacgagttaactcaggcagccctatc 119  Q
    ||||||| | ||| || ||||||||||||||||||||| | ||||||| | |||| ||| |||||||||||||||||||||||| |||||||||||| ||    
T  9451442 gtaaacaacggctggtagatagatttcagaactctcatatcgagttcaacaggagacaaacaaatagggtagctcacgagttaaatcaggcagccctgtc 9451541  T
Q  120 taatcctagcccccatgtgattgatgatatacctacatgtat 161  Q
    |||||||||||||||| | ||||||||| |||||||||||||    
T  9451542 taatcctagcccccatattattgatgatgtacctacatgtat 9451583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 32 - 135
Target Start/End: Original strand, 20492474 - 20492577
Alignment:
Q  32 tagttgatagatttcagaactctcatgttgagttcagccggaggcaagcaaatagggtagctcacgagttaactcaggcagccctatctaatcctagccc 131  Q
    ||||| |||||||| ||||||||||| | ||||| |   |||||||||| |||||||| |||||||| ||| |||||||||||||||| ||| ||| |||    
T  20492474 tagttaatagattttagaactctcatctcgagtttaataggaggcaagcgaatagggtcgctcacgaattagctcaggcagccctatccaattctaaccc 20492573  T
Q  132 ccat 135  Q
    ||||    
T  20492574 ccat 20492577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 98
Target Start/End: Original strand, 12980730 - 12980790
Alignment:
Q  38 atagatttcagaactctcatgttgagttcagccggaggcaagcaaatagggtagctcacga 98  Q
    |||||||||||||||||||||| ||||||| | |||||||| | ||| |||| ||||||||    
T  12980730 atagatttcagaactctcatgtcgagttcaacaggaggcaaacgaatggggtcgctcacga 12980790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 126; Significance: 6e-65; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 20 - 161
Target Start/End: Complemental strand, 23059470 - 23059329
Alignment:
Q  20 gtaaacagctgctagttgatagatttcagaactctcatgttgagttcagccggaggcaagcaaatagggtagctcacgagttaactcaggcagccctatc 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  23059470 gtaaacagctgctagttgatagatttcagaactctcatgttgagttcagccggaggcaagcaaatagggtagctcacgagttagctcaggcagtcctatc 23059371  T
Q  120 taatcctagcccccatgtgattgatgatatacctacatgtat 161  Q
    |||||||||||||||||||||||||||| || ||||||||||    
T  23059370 taatcctagcccccatgtgattgatgatgtatctacatgtat 23059329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 20 - 161
Target Start/End: Original strand, 16889124 - 16889264
Alignment:
Q  20 gtaaacagctgctagttgatagatttcagaactctcatgttgagttcagccggaggcaagcaaatagggtagctcacgagttaactcaggcagccctatc 119  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||    
T  16889124 gtaaacagccgctagttgatagatttcagaactctcatgttgagttcagtcggaggcaagcaaatagggtagctcacgagttagctca-gcagccctatc 16889222  T
Q  120 taatcctagcccccatgtgattgatgatatacctacatgtat 161  Q
    |||||||||| ||||||||||||||||| |||||||||||||    
T  16889223 taatcctagctcccatgtgattgatgatgtacctacatgtat 16889264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 20 - 161
Target Start/End: Complemental strand, 37857099 - 37856958
Alignment:
Q  20 gtaaacagctgctagttgatagatttcagaactctcatgttgagttcagccggaggcaagcaaatagggtagctcacgagttaactcaggcagccctatc 119  Q
    ||||||| |||||||  ||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||||||||||| ||||||| | |||  |    
T  37857099 gtaaacaactgctagaggatagatttcagaactctcatgttgagttcaacaggaggcaagcaaatagagtagctcacgagttagctcaggcggtcctgcc 37857000  T
Q  120 taatcctagcccccatgtgattgatgatatacctacatgtat 161  Q
    |||||| | ||||||| | |||||||||||||||||||||||    
T  37856999 taatcccaacccccatattattgatgatatacctacatgtat 37856958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 32 - 130
Target Start/End: Original strand, 35096902 - 35097000
Alignment:
Q  32 tagttgatagatttcagaactctcatgttgagttcagccggaggcaagcaaatagggtagctcacgagttaactcaggcagccctatctaatcctagcc 130  Q
    |||| ||||||||||||||||||||||| |||||||   | ||||||||||||||||| |||||||||||| ||||| || ||||||||||||||||||    
T  35096902 tagtggatagatttcagaactctcatgtcgagttcaatagaaggcaagcaaatagggttgctcacgagttagctcagacaaccctatctaatcctagcc 35097000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 43 - 137
Target Start/End: Original strand, 46078465 - 46078557
Alignment:
Q  43 tttcagaactctcatgttgagttcagccggaggcaagcaaatagggtagctcacgagttaactcaggcagccctatctaatcctagcccccatgt 137  Q
    ||||||||||||||||| ||| ||| |  ||||||| |||||| ||| ||||||||||||||| || || ||||| |||||||||||||||||||    
T  46078465 tttcagaactctcatgtcgagctcaacaagaggcaaacaaata-ggtcgctcacgagttaacttagaca-ccctacctaatcctagcccccatgt 46078557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 135
Target Start/End: Original strand, 9633052 - 9633155
Alignment:
Q  32 tagttgatagatttcagaactctcatgttgagttcagccggaggcaagcaaatagggtagctcacgagttaactcaggcagccctatctaatcctagccc 131  Q
    ||||| |||||||||||||||||||||| |||||||   |||||||||  ||| |||| | | |||||||| ||||| ||  |||||| ||| |||||||    
T  9633052 tagttaatagatttcagaactctcatgtcgagttcaataggaggcaagtgaatggggtcgattacgagttagctcagacaatcctatccaatactagccc 9633151  T
Q  132 ccat 135  Q
    ||||    
T  9633152 ccat 9633155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 38 - 161
Target Start/End: Complemental strand, 17283632 - 17283510
Alignment:
Q  38 atagatttcagaactctcatgttgagttcagccggaggcaagcaaatagggtagctcacgagttaactcaggcagccctatctaatcctagcccccatgt 137  Q
    ||||||||||||||||| |||| |||||||   |||||||| | ||| ||||  ||||||||||||||||  || | ||||| |||| ||| ||||||||    
T  17283632 atagatttcagaactcttatgtcgagttcaataggaggcaaacgaatggggtgactcacgagttaactcaaacaactctatccaatcatag-ccccatgt 17283534  T
Q  138 gattgatgatatacctacatgtat 161  Q
     || |||||| ||||| |||||||    
T  17283533 tatagatgatgtaccttcatgtat 17283510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 116
Target Start/End: Original strand, 6969609 - 6969687
Alignment:
Q  38 atagatttcagaactctcatgttgagttcagccggaggcaagcaaatagggtagctcacgagttaactcaggcagccct 116  Q
    |||||||||||||||||||||| || ||||    |||| ||| |||| |||| |||||||||||| ||||| |||||||    
T  6969609 atagatttcagaactctcatgtcgatttcaataagaggtaagtaaatggggtcgctcacgagttagctcagacagccct 6969687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 116; Significance: 5e-59; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 22 - 157
Target Start/End: Original strand, 11657618 - 11657753
Alignment:
Q  22 aaacagctgctagttgatagatttcagaactctcatgttgagttcagccggaggcaagcaaatagggtagctcacgagttaactcaggcagccctatcta 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||    
T  11657618 aaacagctgctagttgatagatttcagaactctcatgttgagttcagccggaggcaagcaaatagggtagctcacgagttagcttaggtagccctatcta 11657717  T
Q  122 atcctagcccccatgtgattgatgatatacctacat 157  Q
    |||||||||| ||||||||||||||| |||||||||    
T  11657718 atcctagccctcatgtgattgatgatgtacctacat 11657753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 20 - 161
Target Start/End: Complemental strand, 13104499 - 13104357
Alignment:
Q  20 gtaaacagctgctagttgatagatttcagaactctcatgttgagttcagccggaggcaa-gcaaatagggtagctcacgagttaactcaggcagccctat 118  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||||| |  ||||||| |||| ||||||||||||||||||| ||||| ||||||| |    
T  13104499 gtaaacagctggtagtagatagatttcagaactctcatgttgagttcaacaagaggcaaagcaagtagggtagctcacgagttagctcagacagccctgt 13104400  T
Q  119 ctaatcctagcccccatgtgattgatgatatacctacatgtat 161  Q
    |||||| |||||||||| | ||||| ||| |||||| ||||||    
T  13104399 ctaatcttagcccccatattattgacgatgtacctatatgtat 13104357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 20 - 161
Target Start/End: Original strand, 32899885 - 32900026
Alignment:
Q  20 gtaaacagctgctagttgatagatttcagaactctcatgttgagttcagccggaggcaagcaaatagggtagctcacgagttaactcaggcagccctatc 119  Q
    |||||||| ||||||| ||||||||||||||||||||||||||||||| | |||| ||| |||||||||||| |||||||||| |||| |||||||| ||    
T  32899885 gtaaacagttgctagtagatagatttcagaactctcatgttgagttcaccaggagacaatcaaatagggtagttcacgagttagctcatgcagccctgtc 32899984  T
Q  120 taatcctagcccccatgtgattgatgatatacctacatgtat 161  Q
    ||||| |||||||||  | |||||||||  ||||| ||||||    
T  32899985 taatcatagcccccacattattgatgatgcacctatatgtat 32900026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 20 - 161
Target Start/End: Complemental strand, 27862209 - 27862077
Alignment:
Q  20 gtaaacagctgctagttgatagatttcagaactctcatgttgagttcagccggaggcaagcaaatagggtagctcacgagttaactcaggcagccctatc 119  Q
    ||||| |||||||||  ||||||||||||||||||||||||||||||| | ||||||||  |||||||||||||||           |||||||||| ||    
T  27862209 gtaaatagctgctagaggatagatttcagaactctcatgttgagttcaacaggaggcaaataaatagggtagctca-----------aggcagccctgtc 27862121  T
Q  120 taatcctagccccc--atgtgattgatgatatacctacatgtat 161  Q
    ||||||||||||||  || | ||||||||| |||||||||||||    
T  27862120 taatcctagcccccatattttattgatgatgtacctacatgtat 27862077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 102; Significance: 1e-50; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 20 - 161
Target Start/End: Original strand, 27877683 - 27877824
Alignment:
Q  20 gtaaacagctgctagttgatagatttcagaactctcatgttgagttcagccggaggcaagcaaatagggtagctcacgagttaactcaggcagccctatc 119  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||| ||    
T  27877683 gtaaacagctgctagtagatagatttcataactctcatgttgagttcagcaggaggcaagcaaatagggtagctcacgagttagctcaggcaaccctgtc 27877782  T
Q  120 taatcctagcccccatgtgattgatgatatacctacatgtat 161  Q
    ||||||||||| ||| || ||||||||| |||||||||||||    
T  27877783 taatcctagccgccacgttattgatgatgtacctacatgtat 27877824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 20 - 161
Target Start/End: Complemental strand, 10395487 - 10395346
Alignment:
Q  20 gtaaacagctgctagttgatagatttcagaactctcatgttgagttcagccggaggcaagcaaatagggtagctcacgagttaactcaggcagccctatc 119  Q
    ||||||||||||||||||||| ||| ||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||| |||| |||||| | ||    
T  10395487 gtaaacagctgctagttgataaattccagaactcttatgttaagttcagcaggaggcaagcaaatagggtagctcacgagttagctcaagcagccatgtc 10395388  T
Q  120 taatcctagcccccatgtgattgatgatatacctacatgtat 161  Q
    | |||||||||||||||| ||||||||| |||||||||||||    
T  10395387 tgatcctagcccccatgttattgatgatgtacctacatgtat 10395346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 20 - 162
Target Start/End: Original strand, 17321857 - 17321999
Alignment:
Q  20 gtaaacagctgctagttgatagatttcagaactctcatgttgagttcagccggaggcaagcaaatagggtagctcacgagttaactcaggcagccctatc 119  Q
    |||||||| || || | ||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||||||| |||| |||||||||||    
T  17321857 gtaaacagttgttattggatagatttcagaactctcatgtcgagttcaacaggaggcaagcaaatagggtagctcacgagttagctcaagcagccctatc 17321956  T
Q  120 taatcctagcccccatgtgattgatgatatacctacatgtatg 162  Q
    |||||||||||||||| | ||||||||| ||||  ||||||||    
T  17321957 taatcctagcccccatattattgatgatgtaccctcatgtatg 17321999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 20 - 157
Target Start/End: Original strand, 12539098 - 12539235
Alignment:
Q  20 gtaaacagctgctagttgatagatttcagaactctcatgttgagttcagccggaggcaagcaaatagggtagctcacgagttaactcaggcagccctatc 119  Q
    ||||||| ||| |||| ||||||||||||||||||||||| ||||||| | ||||||||||||||||| |||||||||||||| || | |||||| | ||    
T  12539098 gtaaacaactgttagtggatagatttcagaactctcatgtcgagttcaacaggaggcaagcaaataggatagctcacgagttagctgatgcagccatgtc 12539197  T
Q  120 taatcctagcccccatgtgattgatgatatacctacat 157  Q
    |||||||||||||||| | ||||||||| |||||||||    
T  12539198 taatcctagcccccatattattgatgatgtacctacat 12539235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 41 - 161
Target Start/End: Original strand, 40609930 - 40610050
Alignment:
Q  41 gatttcagaactctcatgttgagttcagccggaggcaagcaaatagggtagctcacgagttaactcaggcagccctatctaatcctagcccccatgtgat 140  Q
    ||||||||||||||||||||||||||| | | ||  ||| ||||||||||||| ||||||||| |||||||||||| |||||||||| |||||| || ||    
T  40609930 gatttcagaactctcatgttgagttcatcagaagataagtaaatagggtagcttacgagttaattcaggcagccctgtctaatcctaacccccacgttat 40610029  T
Q  141 tgatgatatacctacatgtat 161  Q
    ||||||| ||| |||||||||    
T  40610030 tgatgatgtacatacatgtat 40610050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 32 - 153
Target Start/End: Original strand, 2114350 - 2114471
Alignment:
Q  32 tagttgatagatttcagaactctcatgttgagttcagccggaggcaagcaaatagggtagctcacgagttaactcaggcagccctatctaatcctagccc 131  Q
    ||||| |||||||||||||||||||||| ||||||| | ||| | |||| ||| |||| |||||||| ||| || ||||||||||||| |||||||||||    
T  2114350 tagttaatagatttcagaactctcatgtcgagttcaacaggaaggaagcgaatggggtcgctcacgaattagcttaggcagccctatccaatcctagccc 2114449  T
Q  132 ccatgtgattgatgatatacct 153  Q
    || ||| || |||||| |||||    
T  2114450 ccgtgttatagatgatctacct 2114471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 32 - 135
Target Start/End: Complemental strand, 3601338 - 3601235
Alignment:
Q  32 tagttgatagatttcagaactctcatgttgagttcagccggaggcaagcaaatagggtagctcacgagttaactcaggcagccctatctaatcctagccc 131  Q
    ||||| |||||||||||||||||||||| |||||||   |||||||||| |||  ||| |||||||||||| || || || |||||||||||| ||| ||    
T  3601338 tagttaatagatttcagaactctcatgtcgagttcaataggaggcaagcgaatgaggttgctcacgagttagcttagacaaccctatctaatcatagtcc 3601239  T
Q  132 ccat 135  Q
    ||||    
T  3601238 ccat 3601235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0151 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0151
Description:

Target: scaffold0151; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 37 - 161
Target Start/End: Complemental strand, 21462 - 21339
Alignment:
Q  37 gatagatttcagaactctcatgttgagttcagccggaggcaagcaaatagggtagctcacgagttaactcaggcagccctatctaatcctagcccccatg 136  Q
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T  21462 gatagatttcagaa-tctcatgtcgagttcaacaggaggcaaggaaatagggtagctcataagttagctcaagtagccctatctaatcctagcccccata 21364  T
Q  137 tgattgatgatatacctacatgtat 161  Q
      ||||||||| |||| ||||||||    
T  21363 ctattgatgatgtacccacatgtat 21339  T

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