View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8648_low_1 (Length: 662)
Name: NF8648_low_1
Description: NF8648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8648_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 633; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 633; E-Value: 0
Query Start/End: Original strand, 10 - 646
Target Start/End: Original strand, 44209934 - 44210570
Alignment:
| Q |
10 |
acatcaaatggaggatagtcaaacaatcggagacagaaaccaaggaaaactattggaaaatcaataagagtgagttaggtgtaaatgatcaactttgaac |
109 |
Q |
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| T |
44209934 |
acatcaaatggaggatagtcaaacaatcggagacagaaaccaaggaaaactattggaaaatcaataagagtgagttaggtgtaaatgatcaactttgaac |
44210033 |
T |
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| Q |
110 |
caaaatacatgtcaagactgtatgacatcaattgacccatgaagccaacccacctagtgggagaaagcgtagttgttattgcattgaattaaatttcaac |
209 |
Q |
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| T |
44210034 |
caaaatacatgtcaagactgtatgacatcaattgacccatgaagccaacccacctagtgggagaaagcgtagttgttattgcattgaattaaatttcaac |
44210133 |
T |
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| Q |
210 |
actttgtgcagcattattcacaatcatcagcacatcaataacatggtgaggcttggatagggcagattcatctctaggaccatcaattatcacatgtcaa |
309 |
Q |
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| T |
44210134 |
actttgtgcagcattattcacaatcatcagcacatcaataacatggtgaggcttggatagggcagattcatctctaggaccatcaattatcacatgtcaa |
44210233 |
T |
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| Q |
310 |
ttcatctacaaaatccaaaattaacatttgtgtatcacaaactacaggaccaagatctgcatggttgactctcactgcttgctaatttcctaatgtccaa |
409 |
Q |
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| T |
44210234 |
ttcatctacaaaatccaaaattaacatttgtgtatcacaaactacaggaccaagatctgcatggttgactctcactgcttgctaatttcctaatgtccaa |
44210333 |
T |
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| Q |
410 |
aatttacaattcttatttctctaggctgtctattctgctgtggcattttaaaattccagaaatcttactattttgttggttcattccaggatattgggga |
509 |
Q |
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| T |
44210334 |
aatttacaattcttatttctctaggctgtctattctgctgtggcattttaaaattccagaaatcttaccattttgttggttcattccaggatattgggga |
44210433 |
T |
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| Q |
510 |
ttcctggagcgtcgagtctgtgaaggacagtcattagaagaatgccctgtttcttgacagtgcgaacaaactgcttgccttgggttggtatgatgggcgt |
609 |
Q |
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| T |
44210434 |
ttcctggagcgtcgagtctgtgaaggacagtcattagaagaatgccctgtttcttgacagtgcgaacaaactgcttgccttgggttggtatgatgggcgt |
44210533 |
T |
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| Q |
610 |
tgctggttgatgcagtagaccttgggttggtatgatg |
646 |
Q |
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| T |
44210534 |
tgctggttgatgcagtagaccttgggttggtatgatg |
44210570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 587 - 627
Target Start/End: Original strand, 44210553 - 44210593
Alignment:
| Q |
587 |
ccttgggttggtatgatgggcgttgctggttgatgcagtag |
627 |
Q |
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| T |
44210553 |
ccttgggttggtatgatggacgttgctggttgatgcagtag |
44210593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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