View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8648_low_12 (Length: 294)

Name: NF8648_low_12
Description: NF8648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8648_low_12
NF8648_low_12
[»] chr5 (4 HSPs)
chr5 (1-277)||(29249736-29250013)
chr5 (15-98)||(29567397-29567480)
chr5 (188-258)||(33621410-33621480)
chr5 (69-111)||(29426294-29426336)
[»] chr4 (2 HSPs)
chr4 (1-111)||(18986989-18987099)
chr4 (194-247)||(49193489-49193541)
[»] chr8 (4 HSPs)
chr8 (188-257)||(35812863-35812932)
chr8 (191-272)||(7383913-7383993)
chr8 (189-258)||(24754485-24754554)
chr8 (188-257)||(29726289-29726358)
[»] chr7 (2 HSPs)
chr7 (188-258)||(46178074-46178144)
chr7 (1-64)||(43712723-43712786)
[»] chr2 (1 HSPs)
chr2 (188-257)||(42761471-42761540)
[»] chr3 (2 HSPs)
chr3 (188-239)||(30075627-30075678)
chr3 (188-272)||(1642909-1642993)
[»] chr6 (1 HSPs)
chr6 (188-258)||(31293635-31293705)


Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-124; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 29250013 - 29249736
Alignment:
Q  1 attatttaggcaggtattctgatataaccaattacatgattgagcaggtctgaatagatattactctgtgatacgcaatttagtacaaaatgttaccaaa 100  Q
    ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29250013 attatttaggcaggtgttctgatataaccaattacatgattgagtaggtctgaatagatattactctgtgatacgcaatttagtacaaaatgttaccaaa 29249914  T
Q  101 tatcggctatacatcatttgacaaaaattagaataaaaattcaatttaatctttaaactatcactatctcatcaata-nnnnnnnncgcaaacaaaaatg 199  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||    
T  29249913 tatcggctatgcatcatttgacaaaaattagaataaaaattcaatttaatctttaaactatcactatctcatcaatatttttttttcgcaaacaaaaatg 29249814  T
Q  200 atatatattaataacactggtgaagcaccctgcacaaggcatgcaaaaagtgattcacctaacaagatttacagagac 277  Q
    ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  29249813 atatatattaataacaccggtgaagcaccctgcacaaggcgtgcaaaaagtgattcacctaacaagatttacagagac 29249736  T

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Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 15 - 98
Target Start/End: Original strand, 29567397 - 29567480
Alignment:
Q  15 tattctgatataaccaattacatgattgagcaggtctgaatagatattactctgtgatacgcaatttagtacaaaatgttacca 98  Q
    |||||||||||||||||||||| ||||| |||||| ||||||||||||| |||| |||| ||||||||||||||||||||||||    
T  29567397 tattctgatataaccaattacacgattgtgcaggtgtgaatagatattattctgcgatatgcaatttagtacaaaatgttacca 29567480  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 258
Target Start/End: Complemental strand, 33621480 - 33621410
Alignment:
Q  188 caaacaaaaatgatatatattaataacactggtgaagcaccctgcacaaggcatgcaaaaagtgattcacc 258  Q
    |||||||||||||| |||||||||||||  | ||| ||| |||||| ||||| ||| ||||||||||||||    
T  33621480 caaacaaaaatgatgtatattaataacaacgatgatgcatcctgcataaggcgtgcgaaaagtgattcacc 33621410  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 111
Target Start/End: Complemental strand, 29426336 - 29426294
Alignment:
Q  69 tgatacgcaatttagtacaaaatgttaccaaatatcggctata 111  Q
    ||||| || |||||||||||||||| |||||||||||||||||    
T  29426336 tgatatgcgatttagtacaaaatgtcaccaaatatcggctata 29426294  T

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Target: chr4 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 18987099 - 18986989
Alignment:
Q  1 attatttaggcaggtattctgatataaccaattacatgattgagcaggtctgaatagatattactctgtgatacgcaatttagtacaaaatgttaccaaa 100  Q
    |||||||| |||| |||||||||||||||||||||| ||||| |||||  |||||||||| || ||||  |||| | |||||||||||||||| ||||||    
T  18987099 attatttatgcagatattctgatataaccaattacacgattgtgcaggcgtgaatagatactattctgcaatacacgatttagtacaaaatgtcaccaaa 18987000  T
Q  101 tatcggctata 111  Q
    |||||||||||    
T  18986999 tatcggctata 18986989  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 194 - 247
Target Start/End: Original strand, 49193489 - 49193541
Alignment:
Q  194 aaaatgatatatattaataacactggtgaagcaccctgcacaaggcatgcaaaa 247  Q
    ||||||||||||||||||||||||||||||||| |||||||||| | |||||||    
T  49193489 aaaatgatatatattaataacactggtgaagca-cctgcacaagacgtgcaaaa 49193541  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 188 - 257
Target Start/End: Original strand, 35812863 - 35812932
Alignment:
Q  188 caaacaaaaatgatatatattaataacactggtgaagcaccctgcacaaggcatgcaaaaagtgattcac 257  Q
    ||||||||||| || |||||||||||||  ||||| ||||| |||||||||| |||||||||||||||||    
T  35812863 caaacaaaaattatgtatattaataacaacggtgatgcaccttgcacaaggcgtgcaaaaagtgattcac 35812932  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 272
Target Start/End: Complemental strand, 7383993 - 7383913
Alignment:
Q  191 acaaaaatgatatatattaataacactggtgaagcaccctgcacaaggcatgcaaaaagtgattcacctaacaagatttaca 272  Q
    |||||||||||||||| ||||||||  ||||| ||||| |||||||| ||||| |||||||| ||||| | ||| |||||||    
T  7383993 acaaaaatgatatata-taataacaacggtgatgcaccttgcacaagacatgcgaaaagtgaatcaccgatcaaaatttaca 7383913  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 258
Target Start/End: Complemental strand, 24754554 - 24754485
Alignment:
Q  189 aaacaaaaatgatatatattaataacactggtgaagcaccctgcacaaggcatgcaaaaagtgattcacc 258  Q
    |||| ||||||||||||||||||||||  |||||  |||| | ||||||  |||| ||||||||||||||    
T  24754554 aaaccaaaatgatatatattaataacaacggtgatacaccttacacaagatatgctaaaagtgattcacc 24754485  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 257
Target Start/End: Complemental strand, 29726358 - 29726289
Alignment:
Q  188 caaacaaaaatgatatatattaataacactggtgaagcaccctgcacaaggcatgcaaaaagtgattcac 257  Q
    |||||||||||||| |||||||||||||  || || ||||||| |||||||| || ||||| ||| ||||    
T  29726358 caaacaaaaatgatttatattaataacaacggggatgcaccctacacaaggcgtggaaaaaatgaatcac 29726289  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 188 - 258
Target Start/End: Original strand, 46178074 - 46178144
Alignment:
Q  188 caaacaaaaatgatatatattaataacactggtgaagcaccctgcacaaggcatgcaaaaagtgattcacc 258  Q
    |||||||||||||| |||||||||||||  || || |||||||||||||||| |||||||| ||| |||||    
T  46178074 caaacaaaaatgatttatattaataacaacggagatgcaccctgcacaaggcgtgcaaaaaatgaatcacc 46178144  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 43712723 - 43712786
Alignment:
Q  1 attatttaggcaggtattctgatataaccaattacatgattgagcaggtctgaatagatattac 64  Q
    |||||||||| || ||||||||||||| |||||||| ||||| |||||| | ||||||||||||    
T  43712723 attatttaggtagatattctgatataatcaattacacgattgtgcaggtgtaaatagatattac 43712786  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 257
Target Start/End: Original strand, 42761471 - 42761540
Alignment:
Q  188 caaacaaaaatgatatatattaataacactggtgaagcaccctgcacaaggcatgcaaaaagtgattcac 257  Q
    |||||||||||||| ||||||||||| |  ||||| ||||| |||||||||| |||||||||||| ||||    
T  42761471 caaacaaaaatgatgtatattaataataacggtgatgcaccttgcacaaggcgtgcaaaaagtgaatcac 42761540  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 188 - 239
Target Start/End: Original strand, 30075627 - 30075678
Alignment:
Q  188 caaacaaaaatgatatatattaataacactggtgaagcaccctgcacaaggc 239  Q
    ||||| ||||||| |||||||||||||| ||||||||||||| |||||||||    
T  30075627 caaaccaaaatgagatatattaataacaatggtgaagcaccccgcacaaggc 30075678  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 272
Target Start/End: Original strand, 1642909 - 1642993
Alignment:
Q  188 caaacaaaaatgatatatattaataacactggtgaagcaccctgcacaaggcatgcaaaaagtgattcacctaacaagatttaca 272  Q
    ||||| |||||||||||||||||||||| || |||  ||||||||||||||  ||| |||| ||| ||| | ||||||| |||||    
T  1642909 caaaccaaaatgatatatattaataacaatgttgatccaccctgcacaaggtgtgctaaaaatgaatcatcgaacaagagttaca 1642993  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 258
Target Start/End: Complemental strand, 31293705 - 31293635
Alignment:
Q  188 caaacaaaaatgatatatattaataacactggtgaagcaccctgcacaaggcatgcaaaaagtgattcacc 258  Q
    |||||||||||||| |||||||||||||  ||||| |||| || ||  |||| |||||||||||| |||||    
T  31293705 caaacaaaaatgatgtatattaataacaacggtgatgcactcttcattaggcgtgcaaaaagtgaatcacc 31293635  T

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