View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8648_low_2 (Length: 462)
Name: NF8648_low_2
Description: NF8648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8648_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 44802775 - 44803115
Alignment:
| Q |
1 |
ctttatgctctcttctaccttctttgatatctgttctggtgcagcacgaacgggtcgaaccaccgtcatccgacccgatctggctacaccccaccgtgtc |
100 |
Q |
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| T |
44802775 |
ctttatgctctcttcaaccttctttgatatctgttctggtgcagcacgaacgggtcgaaccaccgtcatccgacccgatccggctacaccccaccgtgtc |
44802874 |
T |
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| Q |
101 |
tgcagtggtgttgctggtgagatcttgatggtttgtgggaatcctgatgagttgaagagaagcttggggtttgaaaggctggtgagaccacctagtgttg |
200 |
Q |
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| T |
44802875 |
tgcagtggtgttgctggtgagatcttgatggtttgtgggaatcctgatgagttgaagagaagcttggggtttgaaaggctgctgagaccacctattgttg |
44802974 |
T |
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| Q |
201 |
ccattctaatatctatgtatggagataaggatcggagataacttgaagagatttttctactatatatactaaacttgcaacggatttatgtacacatatt |
300 |
Q |
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| T |
44802975 |
ccattctaatatc----tatggagataaggatcggagataacttgaagagatttttctactatatatactaaacttgctgcggatttatgtacacatatt |
44803070 |
T |
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| Q |
301 |
tcttatcgggtggcaaccaattatgatcttccacgtgtgttccaa |
345 |
Q |
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| T |
44803071 |
tcttatcgggtggcaaccaattatgatcttccacgtgtgttccaa |
44803115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 345 - 450
Target Start/End: Original strand, 44803153 - 44803258
Alignment:
| Q |
345 |
aaacgaaattatttgtttcaagataaagagtgttcaaagaaattatatatgtttcaagttagatggaaattagacagatctaacttgcacgtaacggaga |
444 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
44803153 |
aaacgaaattatttgtttcaagataaagagtgttcaaagaaattatatatgtttcaagttagatggaaattagacagatctaacttgcacgtagcggaga |
44803252 |
T |
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| Q |
445 |
tgatgt |
450 |
Q |
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|||||| |
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| T |
44803253 |
tgatgt |
44803258 |
T |
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