View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8648_low_3 (Length: 456)
Name: NF8648_low_3
Description: NF8648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8648_low_3 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 379; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 439
Target Start/End: Original strand, 42802432 - 42802870
Alignment:
| Q |
1 |
tactgatgcatcctcctcctcaatcacaaatgaagacagcagtaactcactcccatcctcttttggaaatgcttaatccaccccctcccctccccttcct |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42802432 |
tactgatgcatcctcctcctcgatcacaaatgaagacagcagtaactcactcccatcctcttttggaaatgcttaatccaccccctcccctccccttcct |
42802531 |
T |
|
| Q |
101 |
ttttattattaggtctgtctatgtctttttaagtagtaattatctcaaatgtctcaaaatgaggtcggcattaagagtagtctaataagatatctcaatt |
200 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||| |||||||| |
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|
| T |
42802532 |
ttttattattaggtctgtctatgtccatgtaagtagtaattatctcaaatgtcccaaaatgaggttggcattaagagtagtctaatcagagctctcaatt |
42802631 |
T |
|
| Q |
201 |
gaagaatatgtatcttttcagtttcaacaatgtgatctaagaatcaaaatgaaaattctatattttaccctccttttaagagattctcttgagtgtaggt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
42802632 |
gaagaatatgtatcttttcagtttcaacaatgtaatctaagaatcaaaatgaaaattctatattttcccctccttttaagagattctcttgagtgtaggt |
42802731 |
T |
|
| Q |
301 |
ttggtatcactatggcgtgtcgcaatcatggtgatccatcgtgatttttcaaaaaatacacttataacttctgcaaaatcaattaaaatgagtcaccgtg |
400 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42802732 |
ttggtatcactatggcgtgtcacaattatggtgatccatcgtgatttttcgaaaaatacacttataacttctgcaaaatcaattaaaatgagtcaccgtg |
42802831 |
T |
|
| Q |
401 |
attctagtatactcatgtaagttaagcaacgcaagggtt |
439 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| |
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|
| T |
42802832 |
attctagtatacccatgtaagttaagcaacgcaagggtt |
42802870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 116 - 439
Target Start/End: Complemental strand, 25514990 - 25514652
Alignment:
| Q |
116 |
tgtctatgtctttttaagtagtaattatctcaaatgtctcaaaatgaggtcggcattaagagtagtcta-----ataagatatctcaattgaagaatatg |
210 |
Q |
| |
|
||||||||||| | |||||||||||||||||||||||| ||| |||||||||||||||||||||||||| || || ||||||||||||| |||| |
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|
| T |
25514990 |
tgtctatgtctatgtaagtagtaattatctcaaatgtcccaagatgaggtcggcattaagagtagtctagtctaatccgagctctcaattgaagagtatg |
25514891 |
T |
|
| Q |
211 |
tatctt------ttcagtttcaacaatgtgatctaagaatcaaaatgaaaattctatattttaccctccttttaagagattctcttgagtgtaggt---- |
300 |
Q |
| |
|
|||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| || |
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|
| T |
25514890 |
tatcttagtattttcagtttcaagaatgtaatctaagaatcaaaatgaaaattctatattttcccctccttttaagagattctcttaagtgtatgtatgc |
25514791 |
T |
|
| Q |
301 |
ttggtatcactatggcgtgtcgcaatcatggtgatccatcgtgatttttcaaaaaatacacttataacttctgcaaaatcaattaaaatgagtcaccgtg |
400 |
Q |
| |
|
|||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25514790 |
atggtatcactgtggtgtgtcacaatcatggtgatccatcgtgatttttcaaaaaatacacttataacttctgcaaaatcaattaaaatgagtcaccgtg |
25514691 |
T |
|
| Q |
401 |
attctagtatactcatgtaagttaagcaacgcaagggtt |
439 |
Q |
| |
|
||||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
25514690 |
attctagcatacccatgtaagttaagcaacgcaagggtt |
25514652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 50 - 439
Target Start/End: Original strand, 25520303 - 25520723
Alignment:
| Q |
50 |
ctcccatcctcttttggaaatgcttaatccaccccctcccctcccctt---------cctttttattattaggtctgtctatgtcttttt------aagt |
134 |
Q |
| |
|
|||||||||||| ||||||||| |||||||||||| |||||| | || ||||||||||||||||||||||||||||| ||| |||| |
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|
| T |
25520303 |
ctcccatcctctcttggaaatgtttaatccaccccatccccttcgttttggagtctccctttttattattaggtctgtctatgtctatttctatgtaagt |
25520402 |
T |
|
| Q |
135 |
agtaattatctcaaatgtctcaaaatgaggtcggcattaagagta-----gtctaataagatatctcaattgaagaatatgtatctt------ttcagtt |
223 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| ||||||| || |||||||||||| |||||||||| ||||||| |
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|
| T |
25520403 |
agtaattatctcaaatgtcctaaaatgaggtcggcattaagagtaatctagtctaatctgagctctcaattgaagggtatgtatcttagtattttcagtt |
25520502 |
T |
|
| Q |
224 |
tcaacaatgtgatctaagaatcaaaatgaaaattctatattttaccctccttttaagagattctcttgagtgtaggtttg----gtatcactatggcgtg |
319 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| || || || |||||||| ||| ||| |
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|
| T |
25520503 |
tcaagaatgtaatctaagaatcaaaatgaaaattctatatttttccctccttttaagagattctcttaagtatatgtatgcatggtatcactgtggtgtg |
25520602 |
T |
|
| Q |
320 |
tcgcaatcatggtgatccatcgtgatttttcaaaa-aatacacttataacttctgcaaaatcaattaaaatgagtcaccgtgattctagtatactcatgt |
418 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |
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|
| T |
25520603 |
tcacaatcatggtgatccatcgtgatttttcaaaaaaatacacttataacttctgcaaaatcaattaaaatgagtcaccgtgattctagcatacccatgt |
25520702 |
T |
|
| Q |
419 |
aagttaagcaacgcaagggtt |
439 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
25520703 |
aagttaagcaacgcaagggtt |
25520723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 381
Target Start/End: Complemental strand, 28307914 - 28307856
Alignment:
| Q |
324 |
aatcatggtgatccatcgtgatttttcaaaaaataca-cttataacttctgcaaaatca |
381 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||| |||| ||||||||||| |||||||| |
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|
| T |
28307914 |
aatcatagtgatccatcgtgattttttaaaaactacattttataacttctacaaaatca |
28307856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 5e-23; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 28 - 91
Target Start/End: Original strand, 48972 - 49035
Alignment:
| Q |
28 |
aaatgaagacagcagtaactcactcccatcctcttttggaaatgcttaatccaccccctcccct |
91 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
48972 |
aaatgaagacagcagtaagtcactcccatcctcttttggaaatgcttaatacaccccctcccct |
49035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 130 - 277
Target Start/End: Original strand, 49103 - 49267
Alignment:
| Q |
130 |
taagtagtaattatctcaaatgtctcaaaatgaggtcggcattaagagtagtctaataaga----tatctcaattgaagaatatgtatc---------tt |
216 |
Q |
| |
|
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| || | ||||||||||||| |||||||| || |
|
|
| T |
49103 |
taagtagtaattatcttaaatgtcccaaaatgaggtcggcattaagagtagtctaatctgagctctctctcaattgaagagtatgtatcttagtattatt |
49202 |
T |
|
| Q |
217 |
ttc----agtttcaacaatgtgatctaagaatcaaaatgaaaattctatattttaccctcctttt |
277 |
Q |
| |
|
||| | |||||||||||| ||||||||||| ||||||||||||| |||||| | |||||||| |
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|
| T |
49203 |
ttcggttaatttcaacaatgtaatctaagaatccaaatgaaaattctttattttccgctcctttt |
49267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 28 - 80
Target Start/End: Complemental strand, 25851757 - 25851705
Alignment:
| Q |
28 |
aaatgaagacagcagtaactcactcccatcctcttttggaaatgcttaatcca |
80 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
25851757 |
aaatgaagacatcagtaactcactcccttcctcttttggaaatgcttaatcca |
25851705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 32 - 71
Target Start/End: Original strand, 25851612 - 25851651
Alignment:
| Q |
32 |
gaagacagcagtaactcactcccatcctcttttggaaatg |
71 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25851612 |
gaagacagcagtaactcactcccatcctcttttggaaatg |
25851651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 375 - 430
Target Start/End: Original strand, 49316 - 49371
Alignment:
| Q |
375 |
aaaatcaattaaaatgagtcaccgtgattctagtatactcatgtaagttaagcaac |
430 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||| ||||||||||||||||| |
|
|
| T |
49316 |
aaaatcaattaaaatgagtcactgtgattctaacatatccatgtaagttaagcaac |
49371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 25851805 - 25851772
Alignment:
| Q |
1 |
tactgatgcatcctcctcctcaatcacaaatgaa |
34 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |
|
|
| T |
25851805 |
tactgatgcatcctcctcctaaatcacaaatgaa |
25851772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 324 - 363
Target Start/End: Complemental strand, 5277048 - 5277009
Alignment:
| Q |
324 |
aatcatggtgatccatcgtgatttttcaaaaaatacactt |
363 |
Q |
| |
|
||||||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
5277048 |
aatcatggtgatctatcatgatttttcaaaaaatacactt |
5277009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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