View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8648_low_4 (Length: 452)

Name: NF8648_low_4
Description: NF8648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8648_low_4
NF8648_low_4
[»] chr7 (21 HSPs)
chr7 (1-434)||(22840634-22841069)
chr7 (1-310)||(22805885-22806200)
chr7 (1-202)||(22886079-22886273)
chr7 (73-197)||(22810292-22810417)
chr7 (40-202)||(22842788-22842956)
chr7 (1-101)||(22831607-22831707)
chr7 (1-87)||(22815605-22815695)
chr7 (1-181)||(22841213-22841393)
chr7 (1-180)||(22894533-22894712)
chr7 (236-316)||(22841468-22841546)
chr7 (114-195)||(22873811-22873892)
chr7 (263-315)||(22859206-22859258)
chr7 (262-316)||(22894801-22894855)
chr7 (353-410)||(22873626-22873683)
chr7 (6-71)||(22876502-22876567)
chr7 (353-410)||(22889772-22889829)
chr7 (1-48)||(22858995-22859042)
chr7 (353-398)||(22876396-22876441)
chr7 (353-410)||(22894424-22894481)
chr7 (353-409)||(22842650-22842706)
chr7 (358-398)||(22885980-22886020)
[»] chr1 (2 HSPs)
chr1 (53-178)||(21149975-21150101)
chr1 (229-314)||(21149819-21149902)


Alignment Details
Target: chr7 (Bit Score: 386; Significance: 0; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 1 - 434
Target Start/End: Original strand, 22840634 - 22841069
Alignment:
Q  1 ataagattttgtggtaagtgaaagaaaaatttcatgtcgaatttgggtcctactaagaaatgtcctggaacctagctacgaattatttctgaaagaaaca 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22840634 ataagattttgtggtaagtgaaagaaaaatttcatgtctaatttgggtcctactaagaaatgtcctggaacctagctacgaattatttctgaaagaaaca 22840733  T
Q  101 tttcatgaccaggttactaaatttgcctttatcatctgagtccaactaagaaatgtctcatttagtttagtaaaaatgaatgtgtcacacatttgaacca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22840734 tttcatgaccaggttactaaatttgcctttatcatctgagtccaactaagaaatgtctcatttagtttagtaaaaatgaatgtgtcacacatttgaacca 22840833  T
Q  201 cannnnnnnnn--ccaactgtagaagcggatgaacgtttttcaatgtttacatattttaaatatttgatgcaaaaatgaatatatgaaattaaaacatca 298  Q
    ||           |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  22840834 catttttttttttccaactgtagaagcggatgaacgtttttcaatatttacatattttaaatgtttgatgcaaaaatgaatatatgaaattaaaacatca 22840933  T
Q  299 atgttttctaatttcttctgtaccattggtgagttttagtctgctagttgagtttaacaagataaaacaacatgaacacaagtccaaggaacatgattat 398  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22840934 atgttttctaatttcttctgtaccattggtgagttttagtctgctagttgagtttaacaagataaaacaacatgaacacaagtccaaggaacatgattat 22841033  T
Q  399 tggttgtgaatattgggaaaaacccatgccctacat 434  Q
    ||||||||||||||||||||||||||||||||||||    
T  22841034 tggttgtgaatattgggaaaaacccatgccctacat 22841069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 22805885 - 22806200
Alignment:
Q  1 ataagattttgtggtaagtgaaagaaaaatttcatgtcgaatttgggtcctactaagaaatgtcctggaaccta-----gctacgaattatttctgaaag 95  Q
    ||||||||||||  ||||||||  ||||||| || ||| ||||||||||||| |||||||||||||||||| ||     ||||||||| |||||| ||||    
T  22805885 ataagattttgtcctaagtgaagaaaaaattgcaagtctaatttgggtcctagtaagaaatgtcctggaacataacttagctacgaatcatttctaaaag 22805984  T
Q  96 aaacatttcatgaccaggttactaaatttgcctttatcatctg--agtccaactaagaaatgtctcatttagtttagtaaaaatgaatgtgtcacacatt 193  Q
    ||||||  ||||||  |||||||||| ||||||||||||||||  ||||| |||||||||| |||||||||||||||||||||||||||||| |||||||    
T  22805985 aaacatcacatgacatggttactaaaattgcctttatcatctgtgagtcctactaagaaatatctcatttagtttagtaaaaatgaatgtgttacacatt 22806084  T
Q  194 tgaaccac-annnnnnnnnccaactgtagaagcggatgaacgtttttcaatgtttacatattttaaatatttgatgcaaaaatgaatatatgaaattaaa 292  Q
    |||||||| |         |||| ||||| || || | || |||||||||||||||||||  |||| | |||||||| ||| ||||||| |||||| ||     
T  22806085 tgaaccacaaattttctttccaattgtagtagtgggtaaatgtttttcaatgtttacata--ttaagtgtttgatgctaaattgaatatgtgaaatcaag 22806182  T
Q  293 acatcaatgttttctaat 310  Q
    |||||| |||| ||||||    
T  22806183 acatcagtgttgtctaat 22806200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 22886079 - 22886273
Alignment:
Q  1 ataagattttgtggtaagtgaaagaaaaatttcatgtcgaatttgggtcctactaagaaatgtcctggaacctagctacgaattatttctgaaagaaaca 100  Q
    ||||||||||||| |||||||| |||||||| |||||| |||| ||||||||||||||||| |||| |||||||||||||||||||| || |||||||||    
T  22886079 ataagattttgtgctaagtgaaggaaaaattgcatgtctaattcgggtcctactaagaaatttcctagaacctagctacgaattattactaaaagaaaca 22886178  T
Q  101 tttcatgaccaggttactaaatttgcctttatcatctgagtccaactaagaaatgtctcatttagtttagtaaaaatgaatgtgtcacacatttgaacca 200  Q
    |  |||     |||||||||| ||||| |||||||||| |||| ||||||||||||||||||||||||||| || | |||||||| | ||||||||| ||    
T  22886179 tcacat-----ggttactaaaattgcc-ttatcatctgggtcctactaagaaatgtctcatttagtttagtgaaga-gaatgtgttatacatttgaatca 22886271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 73 - 197
Target Start/End: Original strand, 22810292 - 22810417
Alignment:
Q  73 tagctacgaattatttctgaaagaaacatttcatgaccaggttactaaa-tttgcctttatcatctgagtccaactaagaaatgtctcatttagtttagt 171  Q
    ||||||||||||||| || ||||||||||  ||||||  |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  22810292 tagctacgaattattacttaaagaaacatcacatgacatggttactaaaattttcctttatcatctgagtccaactaagaaatgtctcatttagtttagt 22810391  T
Q  172 aaaaatgaatgtgtcacacatttgaa 197  Q
    |||||||||||||| |||||||||||    
T  22810392 aaaaatgaatgtgttacacatttgaa 22810417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 40 - 202
Target Start/End: Original strand, 22842788 - 22842956
Alignment:
Q  40 aatttgggtcctactaagaaatgtcctggaaccta-----gctacgaattatttctgaaagaaacatttcatgaccaggttactaaatttgcctttatca 134  Q
    |||||||||||||||||||||||||||||||||||     ||||||||||||| || ||  ||| |   ||| |   |||||||||| ||||||||||||    
T  22842788 aatttgggtcctactaagaaatgtcctggaacctaactcagctacgaattattactaaataaaagaaa-catcaaatggttactaaaattgcctttatca 22842886  T
Q  135 tct-gagtccaactaagaaatgtctcatttagtttagt-aaaaatgaatgtgtcacacatttgaaccaca 202  Q
    ||| |||||  ||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  22842887 tcttgagtcatactaagaaacgtctcatttagtttagtgaaaaatgaatgtgttacacatttgaaccaca 22842956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 22831607 - 22831707
Alignment:
Q  1 ataagattttgtggtaagtgaaagaaaaatttcatgtcgaatttgggtcctactaagaaatgtcctggaacctagctacgaattatttctgaaagaaaca 100  Q
    ||||||||||||   |||||||  ||||||| |||| | |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  22831607 ataagattttgtccaaagtgaagtaaaaattgcatgcctaatttgggacctactaagaaatgtcctggaacctagctacgaattattactgaaagaaaca 22831706  T
Q  101 t 101  Q
    |    
T  22831707 t 22831707  T

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Target: chr7; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 22815605 - 22815695
Alignment:
Q  1 ataagattttgtggtaagtgaaagaaaaatttcatgtcgaatttgggtcc----tactaagaaatgtcctggaacctagctacgaattatt 87  Q
    ||||||||||||| |||||||| |||||||| |||||| |||||||||||    ||||||||||||||||||||| |||||| ||||||||    
T  22815605 ataagattttgtgctaagtgaaggaaaaattgcatgtctaatttgggtcctaggtactaagaaatgtcctggaacttagctaggaattatt 22815695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 22841213 - 22841393
Alignment:
Q  1 ataagattttgtggtaagtgaaagaaaaatttcatgtcgaatttgggtcctactaagaaatgtcctggaacc-----tagctacgaattatttctgaaag 95  Q
    ||||||||||||   |||||||  ||||||| || |||  ||||||||||||||||||||||||||||||||     |||||| |||||||  |  ||||    
T  22841213 ataagattttgtccaaagtgaagaaaaaattgcaagtcttatttgggtcctactaagaaatgtcctggaacctaacttagctatgaattatcaccaaaag 22841312  T
Q  96 aaacatttcatgaccaggttactaaatttgcctttatcatctgagtccaactaagaaatgtctcatttagtttagtaaaaatgaat 181  Q
    ||||||   ||     |||||||||  |||| | | |||| || |||| |||||||||||||||||||||||||||||||||||||    
T  22841313 aaacatcaaat-----ggttactaatattgcgtatctcatttgggtcctactaagaaatgtctcatttagtttagtaaaaatgaat 22841393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 22894533 - 22894712
Alignment:
Q  1 ataagattttgtggtaagtgaaagaaaaatttcatgtcgaatttgggtcctactaagaaatgtcctggaacc-----tagctacgaattatttctgaaag 95  Q
    ||||||||||||  || |||||  ||||||| || ||| ||||||||||||||||||||||||| |||||||     |||||| |||||||  |  ||||    
T  22894533 ataagattttgtcctaggtgaagaaaaaattgcaagtctaatttgggtcctactaagaaatgtcttggaacctaacttagctatgaattatcaccaaaag 22894632  T
Q  96 aaacatttcatgaccaggttactaaatttgcctttatcatctgagtccaactaagaaatgtctcatttagtttagtaaaaatgaa 180  Q
    ||||||   ||     |||||||||| | || | | |||| || |||| ||||||||||||||||||||||||||||||||||||    
T  22894633 aaacatcaaat-----ggttactaaaatcgcgtatctcatttgggtcctactaagaaatgtctcatttagtttagtaaaaatgaa 22894712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 236 - 316
Target Start/End: Original strand, 22841468 - 22841546
Alignment:
Q  236 ttttcaatgtttacatattttaaatatttgatgcaaaaatgaatatatgaaattaaaacatcaatgttttctaatttcttc 316  Q
    |||||||||||||| ||||   ||| |||||||| ||| ||||||| ||||||||||||||||||||  ||||||||||||    
T  22841468 ttttcaatgtttacgtattg--aatgtttgatgctaaattgaatatgtgaaattaaaacatcaatgtcgtctaatttcttc 22841546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 114 - 195
Target Start/End: Original strand, 22873811 - 22873892
Alignment:
Q  114 ttactaaatttgcctttatcatctgagtccaactaagaaatgtctcatttagtttagtaaaaatgaatgtgtcacacatttg 195  Q
    |||||||| |||| ||| |||| || |||| |||||||||||||||||||||| || | |||||||||| || |||||||||    
T  22873811 ttactaaaattgcatttctcatttgggtcctactaagaaatgtctcatttagtatactgaaaatgaatgggttacacatttg 22873892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 263 - 315
Target Start/End: Original strand, 22859206 - 22859258
Alignment:
Q  263 ttgatgcaaaaatgaatatatgaaattaaaacatcaatgttttctaatttctt 315  Q
    ||||||||||| ||||||| |||||||||||||| |||||| |||||||||||    
T  22859206 ttgatgcaaaattgaatatgtgaaattaaaacattaatgttgtctaatttctt 22859258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 262 - 316
Target Start/End: Original strand, 22894801 - 22894855
Alignment:
Q  262 tttgatgcaaaaatgaatatatgaaattaaaacatcaatgttttctaatttcttc 316  Q
    |||||||| ||| ||||||| ||||||||||||||||||||  ||||||||||||    
T  22894801 tttgatgctaaattgaatatgtgaaattaaaacatcaatgtcgtctaatttcttc 22894855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 353 - 410
Target Start/End: Original strand, 22873626 - 22873683
Alignment:
Q  353 taacaagataaaacaacatgaacacaagtccaaggaacatgattattggttgtgaata 410  Q
    ||||||||||||||||||||| |||||| |  |||||||||||||| | |||||||||    
T  22873626 taacaagataaaacaacatgagcacaagcctgaggaacatgattatggattgtgaata 22873683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 6 - 71
Target Start/End: Original strand, 22876502 - 22876567
Alignment:
Q  6 attttgtggtaagtgaaagaaaaatttcatgtcgaatttgggtcctactaagaaatgtcctggaac 71  Q
    |||||||  ||||||||  ||||||| || ||| ||||||| ||||||||||||||||||||||||    
T  22876502 attttgtcctaagtgaagaaaaaattgcaagtctaatttggatcctactaagaaatgtcctggaac 22876567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 353 - 410
Target Start/End: Original strand, 22889772 - 22889829
Alignment:
Q  353 taacaagataaaacaacatgaacacaagtccaaggaacatgattattggttgtgaata 410  Q
    ||||| || ||||||||||||||||| |||  |||||||||||||| |||||||||||    
T  22889772 taacatgaaaaaacaacatgaacacatgtctgaggaacatgattataggttgtgaata 22889829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 22858995 - 22859042
Alignment:
Q  1 ataagattttgtggtaagtgaaagaaaaatttcatgtcgaatttgggt 48  Q
    ||||||||||||| |||||||| |||||||| |||||| |||||||||    
T  22858995 ataagattttgtgctaagtgaaggaaaaattgcatgtctaatttgggt 22859042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 398
Target Start/End: Original strand, 22876396 - 22876441
Alignment:
Q  353 taacaagataaaacaacatgaacacaagtccaaggaacatgattat 398  Q
    |||||||||||||||||||||||||||| |  | ||||||||||||    
T  22876396 taacaagataaaacaacatgaacacaagcctgaagaacatgattat 22876441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 410
Target Start/End: Original strand, 22894424 - 22894481
Alignment:
Q  353 taacaagataaaacaacatgaacacaagtccaaggaacatgattattggttgtgaata 410  Q
    |||||||| |||||||||| |||||||| |  |||||||||||||| | |||||||||    
T  22894424 taacaagaaaaaacaacataaacacaagcctgaggaacatgattatagtttgtgaata 22894481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 409
Target Start/End: Original strand, 22842650 - 22842706
Alignment:
Q  353 taacaagataaaacaacatgaacacaagtccaaggaacatgattattggttgtgaat 409  Q
    |||||||| |||||||||| ||||||||    |||||||||||||||| ||||||||    
T  22842650 taacaagaaaaaacaacataaacacaagcttgaggaacatgattattgtttgtgaat 22842706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 358 - 398
Target Start/End: Original strand, 22885980 - 22886020
Alignment:
Q  358 agataaaacaacatgaacacaagtccaaggaacatgattat 398  Q
    ||||||| |||||||||||||||||  ||||||||||||||    
T  22885980 agataaagcaacatgaacacaagtctgaggaacatgattat 22886020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 5e-32; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 53 - 178
Target Start/End: Complemental strand, 21150101 - 21149975
Alignment:
Q  53 ctaagaaatgtcctggaacctagctacgaattatttctgaaagaaacatttcatgaccaggttactaaatttgcctttatcatctgagtccaactaagaa 152  Q
    ||||||||||||| ||||||||||||||||||||| || ||||||||||  ||||||  |||||||||| ||| |||||||||  |||||| ||||||||    
T  21150101 ctaagaaatgtccgggaacctagctacgaattattactaaaagaaacatcacatgacatggttactaaaattgtctttatcattcgagtcctactaagaa 21150002  T
Q  153 a-tgtctcatttagtttagtaaaaatg 178  Q
    | |||||||||||||||||||||||||    
T  21150001 attgtctcatttagtttagtaaaaatg 21149975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 229 - 314
Target Start/End: Complemental strand, 21149902 - 21149819
Alignment:
Q  229 tgaacgtttttcaatgtttacatattttaaatatttgatgcaaaaatgaatatatgaaattaaaacatcaatgttttctaatttct 314  Q
    |||| |||||||||||||||| | ||  || | |||||||| ||| ||||||| ||||||||||||||||||||  ||||||||||    
T  21149902 tgaatgtttttcaatgtttacgtgtt--aagtgtttgatgctaaattgaatatgtgaaattaaaacatcaatgtcgtctaatttct 21149819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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