View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8648_low_5 (Length: 386)
Name: NF8648_low_5
Description: NF8648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8648_low_5 |
 | |
|
| [»] scaffold0985 (1 HSPs) |
| | |
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Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-128; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 11 - 378
Target Start/End: Complemental strand, 9817368 - 9817000
Alignment:
| Q |
11 |
ttgaaaattgtcgacgtgaattgaatcgttgtcgtaaccaaggggcagtggccgatccaaacacattgaaaaatttgcaaaagcgtatgacgcacttgat |
110 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||| | |||| | |||||||||||| |||||||| |
|
|
| T |
9817368 |
ttgaaaattgtcgacgtgatttgaatcgttgtcgtaaccaaggggcagcggctgatccaaacacattgacagattttcgaaagcgtatgacacacttgat |
9817269 |
T |
|
| Q |
111 |
gattcaagaggacaagtattggcggcagcgagctaagactcattggtaccgttatggtgaccttaatactaaattttttcatgcttaagcaacgtctaga |
210 |
Q |
| |
|
|||| || ||||||||||||| |||| |||||||||||||| ||||| ||| ||||||||||||| |||||| |||||||||| ||| ||||||||| |
|
|
| T |
9817268 |
gattaaataggacaagtattgatggcatcgagctaagactcactggtatcgtgatggtgaccttaacactaaaaattttcatgctgcagccacgtctaga |
9817169 |
T |
|
| Q |
211 |
aaaa-ggtaaaccgtattaattttctggaaaatgatgtgggggtccaagtttcagatgaacaaggtatgtgtcaggttgcaaaagggtattttgaaactt |
309 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| || | |
|
|
| T |
9817168 |
aaaaaggtaaaccgtattaattttttggaaaatgatgtgggggtcagagtttcagatgagcaaggtatgtgtcaggttgcaaaagggtattttgagacat |
9817069 |
T |
|
| Q |
310 |
tatttttggagagtaacatcacttgtgcaccggttgtaaacattatagaaaaagttgtttttgatgatg |
378 |
Q |
| |
|
|||||||||||||||| |||||| |||||||||||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
9817068 |
tatttttggagagtaatatcactcgtgcaccggttgtagacattatagaaaaagttgtttctgatgatg |
9817000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 11 - 378
Target Start/End: Complemental strand, 10719293 - 10718925
Alignment:
| Q |
11 |
ttgaaaattgtcgacgtgaattgaatcgttgtcgtaaccaaggggcagtggccgatccaaacacattgaaaaatttgcaaaagcgtatgacgcacttgat |
110 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||| | |||| | |||||||||||| |||||||| |
|
|
| T |
10719293 |
ttgaaaattgtcgacgtgatttgaatcgttgtcgtaaccaaggggcagcggctgatccaaacacattgacagattttcgaaagcgtatgacacacttgat |
10719194 |
T |
|
| Q |
111 |
gattcaagaggacaagtattggcggcagcgagctaagactcattggtaccgttatggtgaccttaatactaaattttttcatgcttaagcaacgtctaga |
210 |
Q |
| |
|
|||| || ||||||||||||| |||| |||||||||||||| ||||| ||| ||||||||||||| |||||| |||||||||| ||| ||||||||| |
|
|
| T |
10719193 |
gattaaataggacaagtattgatggcatcgagctaagactcactggtatcgtgatggtgaccttaacactaaaaattttcatgctgcagccacgtctaga |
10719094 |
T |
|
| Q |
211 |
aaaa-ggtaaaccgtattaattttctggaaaatgatgtgggggtccaagtttcagatgaacaaggtatgtgtcaggttgcaaaagggtattttgaaactt |
309 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| || | |
|
|
| T |
10719093 |
aaaaaggtaaaccgtattaattttttggaaaatgatgtgggggtcagagtttcagatgagcaaggtatgtgtcaggttgcaaaagggtattttgagacat |
10718994 |
T |
|
| Q |
310 |
tatttttggagagtaacatcacttgtgcaccggttgtaaacattatagaaaaagttgtttttgatgatg |
378 |
Q |
| |
|
|||||||||||||||| |||||| |||||||||||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
10718993 |
tatttttggagagtaatatcactcgtgcaccggttgtagacattatagaaaaagttgtttctgatgatg |
10718925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 22 - 378
Target Start/End: Original strand, 15229566 - 15229922
Alignment:
| Q |
22 |
cgacgtgaattgaatcgttgtcgtaaccaaggggcagtggccgatccaaacacattgaaaaatttgcaaaagcgtatgacgcacttgatgattcaagagg |
121 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| ||| |||||||||| ||||| ||||| | ||||||||||||||||||||| |||||||||| |
|
|
| T |
15229566 |
cgacatgaattgaatcgttgtcgtaaccaaggggcagcggctgatccaaacaaattgaccaatttacgaaagcgtatgacgcacttgattattcaagagg |
15229665 |
T |
|
| Q |
122 |
acaagtattggcggcagcgagctaagactcattggtaccgttatggtgaccttaatactaaattttttcatgcttaagcaacgtctag-aaaaaggtaaa |
220 |
Q |
| |
|
| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| || |||||| ||| || ||| | ||||||||||| |
|
|
| T |
15229666 |
ataagtattggcggcagcgtgctaagactcattggtaccg-tatggtgaccttaatactaaaaaaattgatgcttcagccacatcttgaaaaaaggtaaa |
15229764 |
T |
|
| Q |
221 |
ccgtattaattttctggaaaatgatgtgggggtccaagtttcagatgaacaaggtatgtgtcaggttgcaaaagggtattttgaaactttatttttggag |
320 |
Q |
| |
|
||||||||||||| |||||||||||||||| |||| |||||||||||||||||||||| | ||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
15229765 |
ccgtattaattttttggaaaatgatgtgggagtccgagtttcagatgaacaaggtatgcgctaggttgctaaagggtattttgaaacattatttttggag |
15229864 |
T |
|
| Q |
321 |
agtaacatcacttgtgcaccggttgtaaacattatagaaaaagttgtttttgatgatg |
378 |
Q |
| |
|
||||||| |||| || || |||||||| ||||||||||||||||| ||| || ||||| |
|
|
| T |
15229865 |
agtaacagcactcgtacatcggttgtagacattatagaaaaagttctttctgttgatg |
15229922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 108; Significance: 4e-54; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 97 - 367
Target Start/End: Complemental strand, 23062430 - 23062159
Alignment:
| Q |
97 |
atgacgcacttgatgattcaagaggacaagtattggcggcagcgagctaagactcattggtaccgttatggtgaccttaatactaaattttttcatgctt |
196 |
Q |
| |
|
||||| || ||||||||||||||||| ||||||||||| |||||||| ||||| || ||||| ||| |||||||| | ||||| |||||||||||||||| |
|
|
| T |
23062430 |
atgacacatttgatgattcaagaggataagtattggcgacagcgagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgctt |
23062331 |
T |
|
| Q |
197 |
aagcaacgtctagaaa-aaggtaaaccgtattaattttctggaaaatgatgtgggggtccaagtttcagatgaacaaggtatgtgtcaggttgcaaaagg |
295 |
Q |
| |
|
||| ||||| ||||| ||||||||||| ||||||||| |||| ||||||| ||||| | | || | ||||||||||| ||| ||||||||||||||| |
|
|
| T |
23062330 |
cagccacgtcaagaaagaaggtaaaccgcattaattttttggataatgatgaaggggtacgaattgctgatgaacaaggcatgagtcaggttgcaaaaga |
23062231 |
T |
|
| Q |
296 |
gtattttgaaactttatttttggagagtaacatcacttgtgcaccggttgtaaacattatagaaaaagttgt |
367 |
Q |
| |
|
|||||||| ||||||||||| ||||| || | ||| ||||||||||||| || || |||||||||||||| |
|
|
| T |
23062230 |
atattttgagactttatttttagagagcaatagtactcgtgcaccggttgttaatataatagaaaaagttgt |
23062159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 101 - 378
Target Start/End: Original strand, 32880707 - 32880985
Alignment:
| Q |
101 |
cgcacttgatgattcaagaggacaagtattggcggcagcgagctaagactcattggtaccgttatggtgaccttaatactaaattttttcatgcttaagc |
200 |
Q |
| |
|
|||| ||||||||||||||||| |||||| || | |||||||| ||||| || ||||| | | |||||||| | ||||| |||| ||||||||||| | | |
|
|
| T |
32880707 |
cgcatttgatgattcaagaggataagtatgggtgacagcgagcaaagacacactggtatcatgatggtgacttgaataccaaatattttcatgcttcaac |
32880806 |
T |
|
| Q |
201 |
aacgtctagaaa-aaggtaaaccgtattaattttctggaaaatgatgtgggggtccaagtttcagatgaacaaggtatgtgtcaggttgcaaaagggtat |
299 |
Q |
| |
|
||||| ||||| ||||||||||| |||||| || |||| ||| ||| ||||| | | || | ||||||||||| ||| ||||||||||||||| ||| |
|
|
| T |
32880807 |
cacgtcaagaaagaaggtaaaccgcattaatgttttggataataatgaaggggtacgaattgctgatgaacaaggcatgcgtcaggttgcaaaagaatat |
32880906 |
T |
|
| Q |
300 |
tttgaaactttatttttggagagtaacatcacttgtgcaccggttgtaaacattatagaaaaagttgtttttgatgatg |
378 |
Q |
| |
|
||||| ||||||||||| ||||| || | ||| ||||||||||||| || || |||||||||||||| | |||||||| |
|
|
| T |
32880907 |
tttgagactttatttttagagagcaatagtactcgtgcaccggttgttaatataatagaaaaagttgtgtctgatgatg |
32880985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 194
Target Start/End: Complemental strand, 43992323 - 43992238
Alignment:
| Q |
109 |
atgattcaagaggacaagtattggcggcagcgagctaagactcattggtaccgttatggtgaccttaatactaaattttttcatgc |
194 |
Q |
| |
|
|||||||||||||| ||||||||| | || |||| || ||||||||||| ||| ||||||| | ||||| || ||||||||||| |
|
|
| T |
43992323 |
atgattcaagaggataagtattggagacaaagagcaaaaactcattggtatcgtgatggtgatttaaatacaaatttttttcatgc |
43992238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 378
Target Start/End: Complemental strand, 28593133 - 28592755
Alignment:
| Q |
1 |
aaagcaagaa-ttgaaaattgtcgacgtgaattgaatcgttgtcgtaaccaaggggcagtggccgatccaaacacattgaaaaatttgcaaaagcgtatg |
99 |
Q |
| |
|
|||||||||| ||||||||||||| ||||| ||||| |||||||| | |||||||| | ||| ||||| | |||| ||| |||| || || ||| |
|
|
| T |
28593133 |
aaagcaagaaattgaaaattgtcgtcgtgacttgaaccgttgtcggagtcaaggggctgcggctgatcctagtttgttgacaaacttgcgcaaacgcatg |
28593034 |
T |
|
| Q |
100 |
acgcacttgatgattcaagaggacaagtattggcggcagcgagctaagactcattggtaccgttatggtgaccttaatactaaattttttcatgcttaag |
199 |
Q |
| |
|
|| || ||||| ||||||||||| ||||||||||| || ||||| ||||| || ||||| ||| |||||||| | ||||| |||||||||||||||| || |
|
|
| T |
28593033 |
acacatttgat-attcaagaggataagtattggcgacaacgagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgcttcag |
28592935 |
T |
|
| Q |
200 |
caacgtctagaaa-aaggtaaaccgtattaattttctggaaaatgatgtgggggtccaagtttcagatgaacaaggtatgtgtcaggttgcaaaagggta |
298 |
Q |
| |
|
| ||||| ||||| ||| ||||||| ||||||||| |||| ||||||| ||||| | | || | ||||||||||| ||| ||||||||||||||| || |
|
|
| T |
28592934 |
ccacgtcaagaaagaagataaaccgcattaattttttggataatgatgaaggggtacgaattgctgatgaacaaggcatgagtcaggttgcaaaagaata |
28592835 |
T |
|
| Q |
299 |
ttttgaaactttatttttggagagtaacatcacttgtgcaccggttgtaaacattatagaaaaagttgtttttgatgatg |
378 |
Q |
| |
|
|||||| ||||||||||| ||||| || | ||| ||||||||||||| || || |||||||||||||| | |||||||| |
|
|
| T |
28592834 |
ttttgagactttatttttagagagcaatagtactcgtgcaccggttgttaatataatagaaaaagttgtgtctgatgatg |
28592755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 99; Significance: 9e-49; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 97 - 378
Target Start/End: Complemental strand, 21279432 - 21279150
Alignment:
| Q |
97 |
atgacgcacttgatgattcaagaggacaagtattggcggcagcgagctaagactcattggtaccgttatggtgaccttaatactaaattttttcatgctt |
196 |
Q |
| |
|
|||||||| |||||||||||||| || || ||||||||||| ||||||||||| |||||||| ||| |||||||| | ||||| ||| |||||||| | |
|
|
| T |
21279432 |
atgacgcaattgatgattcaagaagataactattggcggcaacgagctaagacacattggtatcgtgatggtgacgtgaatacaaaaaaatttcatgcat |
21279333 |
T |
|
| Q |
197 |
aagcaacgtctagaaa-aaggtaaaccgtattaattttctggaaaatgatgtgggggtccaagtttcagatgaacaaggtatgtgtcaggttgcaaaagg |
295 |
Q |
| |
|
||| || || ||||| |||||||||| |||||||||||||| ||||||| |||| | |||| | ||||||||||| ||||||||||||||||||| |
|
|
| T |
21279332 |
cagccacatcaagaaagaaggtaaaccacattaattttctggataatgatgaacgggtacgagttgctgatgaacaaggcatgtgtcaggttgcaaaaga |
21279233 |
T |
|
| Q |
296 |
gtattttgaaactttatttttggagagtaacatcacttgtgcaccggttgtaaacattatagaaaaagttgtttttgatgatg |
378 |
Q |
| |
|
|||||||| ||||||||||| |||||||| | ||| ||||||||||||| | || ||||||||| |||| |||||||||| |
|
|
| T |
21279232 |
atattttgacactttatttttagagagtaatagtactcctgcaccggttgtagatataatagaaaaatttgtgtttgatgatg |
21279150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 273 - 305
Target Start/End: Original strand, 16819948 - 16819980
Alignment:
| Q |
273 |
ggtatgtgtcaggttgcaaaagggtattttgaa |
305 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |
|
|
| T |
16819948 |
ggtatgtgtcaggttgcaaaggggtattttgaa |
16819980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 97 - 378
Target Start/End: Complemental strand, 25907432 - 25907150
Alignment:
| Q |
97 |
atgacgcacttgatgattcaagaggacaagtattggcggcagcgagctaagactcattggtaccgttatggtgaccttaatactaaattttttcatgctt |
196 |
Q |
| |
|
||||| || ||||||||||||||||| ||||||||||| |||||||| ||||| || | ||| ||| |||||||| | ||||| |||||| ||||||||| |
|
|
| T |
25907432 |
atgacacatttgatgattcaagaggataagtattggcgacagcgagcaaagacacacttgtatcgtgatggtgacttgaataccaaatttcttcatgctt |
25907333 |
T |
|
| Q |
197 |
aagcaacgtctagaaa-aaggtaaaccgtattaattttctggaaaatgatgtgggggtccaagtttcagatgaacaaggtatgtgtcaggttgcaaaagg |
295 |
Q |
| |
|
||| | ||| ||||| ||||||||||| ||||||||| |||| ||||||| ||||| | | || | ||||||||||| ||| ||||||| ||||||| |
|
|
| T |
25907332 |
cagccatgtcaagaaagaaggtaaaccgcattaattttttggataatgatgaaggggtacgaattgctgatgaacaaggcatgagtcaggtggcaaaaga |
25907233 |
T |
|
| Q |
296 |
gtattttgaaactttatttttggagagtaacatcacttgtgcaccggttgtaaacattatagaaaaagttgtttttgatgatg |
378 |
Q |
| |
|
|||||||| ||||||||||| ||||| || | ||| ||||||||||||| || || |||||||||||||| | |||||||| |
|
|
| T |
25907232 |
atattttgagactttatttttagagagcaatagtactcgtgcaccggttgttaatataatagaaaaagttgtgtctgatgatg |
25907150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 325
Target Start/End: Complemental strand, 13109023 - 13108963
Alignment:
| Q |
264 |
gatgaacaaggtatgtgtcaggttgcaaaagggtattttgaaactttatttttggagagtaa |
325 |
Q |
| |
|
||||||||||| ||| ||||| ||||||| | |||||||||||||||||||| |||||||| |
|
|
| T |
13109023 |
gatgaacaaggcatgcgtcagattgcaaa-gaatattttgaaactttatttttagagagtaa |
13108963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 179 - 378
Target Start/End: Original strand, 30302013 - 30302212
Alignment:
| Q |
179 |
ctaaattttttcatgcttaagcaacgtctagaaaaaggtaaaccgtattaattttctggaaaatgatgtgggggtccaagtttcagatgaacaaggtatg |
278 |
Q |
| |
|
|||||||||||||||||| ||| ||||| ||||| |||||||||| ||||||||| |||| ||||||| ||||| | | || | ||||||||||| ||| |
|
|
| T |
30302013 |
ctaaattttttcatgcttcagccacgtcaagaaagaggtaaaccgcattaattttttggataatgatgaaggggtacgaattgctgatgaacaaggcatg |
30302112 |
T |
|
| Q |
279 |
tgtcaggttgcaaaagggtattttgaaactttatttttggagagtaacatcacttgtgcaccggttgtaaacattatagaaaaagttgtttttgatgatg |
378 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||| ||||| || | ||| |||||||||||| || || |||||||||||||| | |||||||| |
|
|
| T |
30302113 |
agtcaggttgcaaaagaatattttgagactttatttttagagagcaatagtactcgtgcaccggttggtaatataatagaaaaagttgtgtctgatgatg |
30302212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0985 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0985
Description:
Target: scaffold0985; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 113 - 196
Target Start/End: Complemental strand, 540 - 457
Alignment:
| Q |
113 |
ttcaagaggacaagtattggcggcagcgagctaagactcattggtaccgttatggtgaccttaatactaaattttttcatgctt |
196 |
Q |
| |
|
||||||| |||| ||||||| ||||| |||||||||| || ||||||||| |||| ||||||||||| ||||| |||||||||| |
|
|
| T |
540 |
ttcaagaagacatgtattggaggcagagagctaagacacactggtaccgtgatggagaccttaataccaaattctttcatgctt |
457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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