View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8648_low_6 (Length: 383)
Name: NF8648_low_6
Description: NF8648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8648_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 366
Target Start/End: Complemental strand, 38412753 - 38412366
Alignment:
| Q |
1 |
gcaattaaattcatttccatctcgtaatt-acttacttgctgctaggtttggatttttatattaatccttaa---------------------ggttcca |
78 |
Q |
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| T |
38412753 |
gcaattaaattcatttccatctcgtaatttacttacttgctgctaggtttggatttttatattaatccttaatttttttttttgaaagattaaggttcca |
38412654 |
T |
|
| Q |
79 |
tatatgttttgttatttcctatgaagagttggacacatgtgtgtttgtgtcaaacaccgatgctacatgggtgatttcttatatctttgttaaaatcagt |
178 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
38412653 |
tatatgttttgttatttcctatgaagagttggacacatgtgtgtttgtgtcaaacaccgatgctacatgggtgatttcttatctctttgttaaaatcagt |
38412554 |
T |
|
| Q |
179 |
ttattgcttagtaattatctttactgtgaatcataactagacattatctttacactcggattagtcagggttcgttttgacttttggataccatgctatg |
278 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
38412553 |
ttattgcttagtaattatctttactgcgaatcataactagacattatctttacactcggattagtcagggttcgttgtgacttttggataccatgctatg |
38412454 |
T |
|
| Q |
279 |
agtctaaaataaagagagaaaaatcggagtccaatgaagtatttcggtttctgttatttactagtgtgcactatatattgtgatattt |
366 |
Q |
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|||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38412453 |
agtctaaaataaagagagaaaaatcggagtgcaacgaagtatttcggtttctgttatttactagtgtgcactatatattgtgatattt |
38412366 |
T |
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