View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8648_low_8 (Length: 337)
Name: NF8648_low_8
Description: NF8648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8648_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 15 - 320
Target Start/End: Complemental strand, 9422385 - 9422080
Alignment:
| Q |
15 |
ctgtggaaacttcatcgattcaacaagacaaaagattcttttagcatggttgactattgatgatgccgaccaagttcggataacatggacagaaaaccaa |
114 |
Q |
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| T |
9422385 |
ctgtggaaacttcatcgattcaacaagacaaaagattctcttagcatggttgactattgatgatgccgaccaagttcggataacatggacagaaaaccaa |
9422286 |
T |
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| Q |
115 |
taattgatagaatttcctttcaaggctattgatgaagggggacgaagtgtagatcaattgtgttcaaggtcccagactgttgattacaatatgcattcat |
214 |
Q |
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| T |
9422285 |
taattaatagaatttcctttcaaggctattgatgaagggggacgaagtgtagatcaattgtgttcaaggtcccagactgttgattaccatatgcattcat |
9422186 |
T |
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| Q |
215 |
catcttctttagctgtgtgtttctctttatcctaaagaagacttcatttccatcctacaatcaaatcattaaaaaatagattttaaagcaattttcatga |
314 |
Q |
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| T |
9422185 |
catcttctttagctgtgtgtttctctttatcctaaagaagacttcatttccatcctacaatcaaatcattaaaaaatagattttaaagcaattttcatga |
9422086 |
T |
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| Q |
315 |
accaaa |
320 |
Q |
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|||||| |
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| T |
9422085 |
accaaa |
9422080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 200 - 320
Target Start/End: Complemental strand, 9436516 - 9436395
Alignment:
| Q |
200 |
acaatatgcattcatcatcttctttagctgtgtgtttctctttatcctaaagaagacttcatttccatcctacaatcaaatcattaa-aaaatagatttt |
298 |
Q |
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||||||||||||||||||||||||||| || |||||||||||||| ||||||| ||||||||||||| || || |||||||||||| |||||||| ||| |
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| T |
9436516 |
acaatatgcattcatcatcttctttagttgggtgtttctctttattttaaagaatacttcatttccatgcttcattcaaatcattaaaaaaatagacttt |
9436417 |
T |
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| Q |
299 |
aaagcaattttcatgaaccaaa |
320 |
Q |
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| T |
9436416 |
aaagcaattttcatgagccaaa |
9436395 |
T |
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