View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8649_high_4 (Length: 264)
Name: NF8649_high_4
Description: NF8649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8649_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 9336244 - 9336490
Alignment:
| Q |
1 |
cttcagttcttgcatgaattgcatccgcaagaatttgtgaatctcttagaaacaacacacttgatactcccattgcctgaattaagttcatgaaagttag |
100 |
Q |
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| T |
9336244 |
cttcagttcttgcatgaattgcatccgcaagaatttgtgaatctcttagaaacggcacacttgatactcccattgcctgaattaagttcatgaaagttag |
9336343 |
T |
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| Q |
101 |
caatgcaatgacttatccctcatgcaattgcatcttcggttgtattcaaccagtccaagccttcataaactcgccttccttactacgaattagcctgcat |
200 |
Q |
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| T |
9336344 |
caatgcaatgacttatccctcatgcaattgcatcttcggttgtattccaccagtccaagccttcataaactcgccttccttactacgaattagcctgcat |
9336443 |
T |
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| Q |
201 |
aacccgttctgtcataattttgaaagatactagtttccacgttgcac |
247 |
Q |
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| T |
9336444 |
aacccgttctgtcataattttgaaagatactaacatccacgttgcac |
9336490 |
T |
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Back To:
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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 35 - 232
Target Start/End: Complemental strand, 19210276 - 19210078
Alignment:
| Q |
35 |
ttgtgaatctcttagaaacaacacacttgatactcccattgcctgaattaagttcatgaaagttagcaatgcaatgacttatccctcatgcaattgcatc |
134 |
Q |
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| T |
19210276 |
ttgtgaatcacatagaaacgtcacacttgatactcccattgtctgtaccaacctcatgacagtctgaaatgcaacggcctctccctcatacacttgcatc |
19210177 |
T |
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| Q |
135 |
ttcggttgtattcaaccagtccaagccttcataaactcgccttccttactacgaat-tagcctgcataacccgttctgtcataattttgaaagatacta |
232 |
Q |
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| T |
19210176 |
tcaggctgcatccaacctgtccaagccttcacaaagtcaccttccctaccacgaatgcagcctccataacctgttctgtcacaatttcgaaagaaacta |
19210078 |
T |
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