View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8649_low_11 (Length: 247)
Name: NF8649_low_11
Description: NF8649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8649_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 8615424 - 8615664
Alignment:
| Q |
1 |
cccaactgcaacaatcaatggaagaagaccagttaagaggtggtaggtgaggtgaaaaagttgagaaatttgaagagaaagataagagagaatctttgtc |
100 |
Q |
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| T |
8615424 |
cccaactgcaacaatcaatggaagaagaccagttaagaggtggtaggtgaggtgaaaaagatgagaaatttgaagagaaagataagagagaatctttgtc |
8615523 |
T |
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| Q |
101 |
aagttggttacaagaagaagagacatggacaatgaataaggttagaaaaaaggttgnnnnnnngaaagaggacattagtttggagaaaaatatgtagttt |
200 |
Q |
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| T |
8615524 |
aagttggttacaagaagaagagacatggacaatgaataaggttagaaaaaaggtagtttttttgaaagaggacattagtttggagaaaaataagtagttt |
8615623 |
T |
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| Q |
201 |
ttggaagaagggttggaaggttggattgatgtccatctcat |
241 |
Q |
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| T |
8615624 |
ttggaagaagggttggagggttggtttgatgttgatctcat |
8615664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 49 - 147
Target Start/End: Original strand, 38982852 - 38982946
Alignment:
| Q |
49 |
gaggtgaaaaagttgagaaatttgaagagaaagataagagagaatctttgtcaagttggttacaagaagaagagacatggacaatgaataaggttagaa |
147 |
Q |
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| T |
38982852 |
gaggtgaaaaagttgaga--ttttaagagagagataagagtgaatctttgtcaagttcattactagaagaagag--atggacaatgaataaggtgagaa |
38982946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 147
Target Start/End: Original strand, 41261574 - 41261611
Alignment:
| Q |
110 |
acaagaagaagagacatggacaatgaataaggttagaa |
147 |
Q |
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| T |
41261574 |
acaagaagaagagacatgggcaattaataaggttagaa |
41261611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 147
Target Start/End: Original strand, 46097584 - 46097639
Alignment:
| Q |
90 |
gaatctttgtcaagttggttacaagaagaagagacatggacaatgaataaggttagaa |
147 |
Q |
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| T |
46097584 |
gaatctttgtcaagttcattacaagaagaagag--atggacaatgaatacggtgagaa |
46097639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 147
Target Start/End: Complemental strand, 12201742 - 12201705
Alignment:
| Q |
110 |
acaagaagaagagacatggacaatgaataaggttagaa |
147 |
Q |
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| T |
12201742 |
acaagaagaagagacatgggcaattaataaggttagaa |
12201705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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